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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTGAATCTGTCAGGAAACATGCTTGGATATTATCCTGTCAATGTTCTACCGTCAAAAACTGCCATTGCACCAGTCAATGAAACATTCCTACCCAGGgtatgcaaatcttctagaaccaacatgcatgtcttaagttcatggctcaatgttcatgctctatctgatatggtctctaagaaagttggtcgattttctgtgctctccag

Basic information

species Zea mays
transcript GRMZM2G349794_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G349794_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 5
TGCTCTGAATCTGTCAGGAAACATGCTTGGATATTATCCTGTCAATGTTCTACCGTCAAAAACTGCCATTGCACCAGTCAATGAAACATTCCTACCCAGGgtatgcaaatcttctagaaccaacatgcatgtcttaagttcat-----------ggctcaatg---ttcatgc---tctatctg-atatggtctctaagaaagttggtcgat-tttctgtgctctccag
|||||| ||| |||| |||| | |||||||||||||||||||||  || || || ||||||||||| |||||||| || ||   |||||| || ||||||||| ||  |   |  | ||   |  |   ||  | || |||||              ||||||   || ||||   |   | |  |  || | |||||  ||| ||| |    ||  |||   || |||
TGCTCTAAATTTGTCGGGAACCGTGCTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGgtaagctgaatctgcacaattcatgtatttgcataaatttcattattaattcttatttcaatgaaatttatgcaaatacgtgtacacctgatgtctaa--aagctggcccccattcttgttgcctgcag

upper sequence: GRMZM2G349794_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA04G40750.1 (Glycine max), 5'ss of exon 6
TGCTCTGAATCTGTCAGGAAACATGCTTGGATATTATCCTGTCAATGTTCTACCGTCAAAAACTGCCATTGCACCAGTCAATGAAACATTCCTACCCAGGgtatgcaaatcttctagaaccaacatgcatgtcttaagttcatggctcaatgttcatgctctatctgatatggtctctaagaaagttggtcgattttctgtgctctccag
|||| |||  ||||| || | ||||||||||||||| ||  | |  || ||||| |||||||||||||||||||| ||||||  ||||||  | |||||||||      | ||||       |     ||  | |   ||    | | ||||  |||  |  | || | |  |  | | |      |  | |   | ||||  |   |||
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaat--gtttttctgttcatgatgcctattacatgtattagaagatgaatgaccatagtgaa-ctaacaatgcttgttacctttctaatgg---tgctgtatttctcag

upper sequence: GRMZM2G349794_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA06G14050.2 (Glycine max), 5'ss of exon 6
TGCTCTGAATCTGTCAGGAAACATGCTTGGATATTATCCTGTCAATGTTCTACCGTCAAAAACTGCCATTGCACCAGTCAATGAAACATTCCTACCCAGGgtatgcaaatcttctagaac-caacatgcatgtcttaagttcatggctcaatgttcatgctctatctgatatggtctctaagaaagttggtcgattttctgtgctctccag
|||| |||  ||||| || | ||||||||||||||| ||  | |  || ||||| |||||||||||||||||||||||||||  ||||||  | |||||||||      | || | |  |   |     ||  | |   ||    | | ||||  |||  |  |      ||| |  |||      ||  |     | ||||  |   |||
TGCTTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCAGTCAATCCAACATTTTTGCCCAGGgta---gtgttttttggttcatgatgcctattgcatgtattagaagatgaatgaccatagtgaactaacaatgcttgctac----ctttctaatggtgctgtatttctcag