1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCAATATGGACATTTGTTACAACCAAAAACAATATGGAATGCAGAGGAAACACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAGgtaagtataatgtaaggcagtatctatgatgttttattcattgtgcatcgaatggatttaagactctcaatggaaccatactgttcccatttgaagaata...
species | Zea mays |
transcript | GRMZM2G344476_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAG GTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCAACTTTTAGGCAAEST: gi|148956464|gb|EC902291.2|EC902291
genomic: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAGgtaagtataa ... tgtgttttagGTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCAACTTTTAGGCAA
EST: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAG GTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCAACTTTTAGGCAAEST: gi|74238643|gb|DT646557.1|DT646557
genomic: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAGgtaagtataa ... tgtgttttagGTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCAACTTTTAGGCAA
EST: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAG GTCGATATTTTTCGTGGGTTTTACTTTGCCCGAAGCTCCAEST: gi|211119071|gb|FL021982.1|FL021982
genomic: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAGgtaagtataa ... tgtgttttagGTCGATATTTTCCGTGGGTTT-ACTTTGCCGGAAGCTCCA
EST: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAG GTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCAACTTTTAGGCAAEST: gi|149104205|gb|EE289638.2|EE289638
genomic: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAGgtaagtataa ... tgtgttttagGTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCAACTTTTAGGCAA
EST: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAG GTCGATATTTTCCGTGGGTTTACTTTEST: gi|148936448|gb|EC880552.2|EC880552
genomic: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAGgtaagtataa ... tgtgttttagGTCGATATTTTCCGTGGGTTTACTTT
EST: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAG GTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCAACTTTTAGGCAAEST: gi|149112589|gb|EE191373.2|EE191373
genomic: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAGgtaagtataa ... tgtgttttagGTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCAACTTTTAGGCAA
EST: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAG GTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCAACTTTTAGGCAAEST: gi|50331303|gb|CO526429.1|CO526429
genomic: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAGgtaagtataa ... tgtgttttagGTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCAACTTTTAGGCAA
EST: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAG GTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCAACTTTTAGGCAAEST: gi|148958992|gb|EE010517.2|EE010517
genomic: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAGgtaagtataa ... tgtgttttagGTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCAACTTTTAGGCAA
EST: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAG GTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCAACTTTTAGGCAAEST: gi|148944150|gb|EC889238.2|EC889238
genomic: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAGgtaagtataa ... tgtgttttagGTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCAACTTTTAGGCAA
EST: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAG GTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCAACTTTTAGGCAAEST: gi|71315960|gb|DR794668.1|DR794668
genomic: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAGgtaagtataa ... tgtgttttagGTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCAACTTTTAGGCAA
EST: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAG GTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCTACTTTEST: gi|91875931|gb|EB405888.1|EB405888
genomic: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAGgtaagtataa ... tgtgttttagGTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCAACTTT
EST: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAG GTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCAACTTTTAGGCAA
genomic: CACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAGgtaagtataa ... tgtgttttagGTCGATATTTTCCGTGGGTTTACTTTGCCGGAAGCTCCAACTTTTAGGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAATATGGACATTTGTTACAACCAAAAACAATATGGAATGCAGAGGAAACACCTGAACATTCTTTGCTGGAACAAATTTTGCACTTAGAACCACTAGAGgtaagtataatgtaaggcagtatctatgatgttttattcattgtgcatcgaatggatttaagactctcaatggaaccatactgttcccatttgaagaata
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