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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGCTAACTGGACTTGTGATAGATTCTGGTGATGGTGTTACTCATGTGgtatgtcaataccgttcttccctatatttgactaagtattatggtttgagaggggggggggggggtaatttctaatcatcttcgtgtaaccagctcaaat...

Basic information

species Zea mays
transcript GRMZM2G342386_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G342386_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os08g28190.1 (Oryza sativa), 5'ss of exon 6
GCTTGCTAACTGGACTTGTGATAGATTCTGGTGATGGTGTTACTCATGTGgtatgtcaataccgttcttccctatatttgactaagtattatggtttgagaggggggggggggggtaatttctaatcatcttcgtgtaaccagctcaaat----
| ||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||  ||||    |||||||||||||  || |  ||  | | ||||| | |  | |         ||||||  | |||||   ||   |  |  ||||    
GTTTGCTGACTGGACTTGTCATAGACTCTGGTGATGGTGTCACTCATGTGgtatgataataatagtcttccctatattgtacaatctacaaagatttgaaatgcagagatt----ccatttctgttaatcttgtggtgcactacaaaaatatct

upper sequence: GRMZM2G342386_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT3G27000.1 (Arabidopsis thaliana), 5'ss of exon 6
GCTTGCTAACTGGACTTGTGATAGATTCTGGTGATGGTGTTACTCATGTGgtatgtcaataccgttcttccctatatttgactaagtattatggtttgagaggggggggggggggtaatttctaatcatcttcgtgtaaccagctcaaat
| |||||||||||  | || || |||||||||||||||||||||||||||||| | | |||    |||    | | || ||  |  ||||  | ||  |   | |  |      ||  |  |    |||||| |                
GTTTGCTAACTGGTTTGGTTATTGATTCTGGTGATGGTGTTACTCATGTGgtaag-ctataaacctctgtaattttttagatcatatatt--gcttataatagagaagttaaccgtcttcgcctcacatcttag----------------

upper sequence: GRMZM2G342386_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv14s0068g01630.t01 (Vitis vinifera), 5'ss of exon 6
GCTTGCTAACTGGACTTGTGATAGATTCTGGTGATGGTGTTACTCATGTGgtatgtca-ataccgttcttccctatatttgactaagtattatggtttgagaggggggggg---gggggtaatttctaatcatcttcgtgtaaccagctcaaat
| ||||| |||||||| || || || |||||||||||||| ||||||||||||  | |   |     | |  ||| ||  |||  |  || ||  |||      |         |||    |  | || |    |  ||  |     | |    
GTTTGCTGACTGGACTAGTTATCGACTCTGGTGATGGTGTCACTCATGTGgtaaattatgcaagaaccatttctaaatgagacgtaccataataatttttagttgtttttctttgggatccaaatttatttgcttgggttgatatgtccc----