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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCACATGCTCCATCTATGAGTGAAGAAGAAATAAATTCTCTTCCTGTCTTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccgaattgtcctttgggttgatttgttcatatcaccatatcgagttggttccagtatttcccatcaacacatgaccaacatttaattctgaaatggagacatgaagtaattttttctaatgtttgttttccaatag

Basic information

species Zea mays
transcript GRMZM2G337425_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G337425_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g16570.3 (Oryza sativa), 5'ss of exon 6
GCCCACATGCTCCATCTATGAGTGAAGAAGAAATAAATTCTCTTCCTGTCTTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccgaattgtcctttgggttg-atttgtt------catatcac---catatcgagttggttccagtatttcccatc-aacacatgaccaac-atttaattctgaaatgg--------agacatgaagtaatt--ttttctaatgtttgttttccaatag
|||| |||||||| || ||||||||||||||||||||| |||||||||| |||||||| || ||||||||||| ||| |   | || ||  |||||||||||||    | ||| |||||| || |  |||| ||      |||| ||    |||    |||      | |  || |   ||  | |  | |||||| || |||||| ||| | |          |   || |||| |     | ||||  || |  | | ||||
GCCCTCATGCTCCTTCGATGAGTGAAGAAGAAATAAATGCTCTTCCTGTATTCAAATACAAGGTTCAGGCACATCAGGGAAGTGCCTCTTTCCGAAAAAGgtaagat-gtattatccttttggctacattttttagctggcatagcaaacgcatgataagtctacaactgccttccatctctgataagtaaccaaccatataattccgaatttgtctactttgtatgggatgtaactaaccatttaattcttttgattctatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78109926|gb|DV528341.1|DV528341
EST:     TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG                         TGATGGGCCATCTCAGCTATCGGGTTCTTCAACTGGGGTC-GGCAATGAG
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGG-TCCGGCAATGAG
EST: gi|50332883|gb|CO528009.1|CO528009
EST:     TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG                         TGATGGGCCATCTCAGCTATCGGTTTCTTC
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTC
EST: gi|148928861|gb|EC873779.2|EC873779
EST:     TCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG                         TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAG
genomic: TCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAG
EST: gi|78083979|gb|DV512372.1|DV512372
EST:     TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG                         TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAG
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAG
EST: gi|18164717|gb|BM334556.1|BM334556
EST:     TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG                         TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAG
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAG
EST: gi|91048354|gb|EB158772.1|EB158772
EST:     TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG                         TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCCGGCA-TGAG
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCC-GGCAATGAG
EST: gi|71760470|gb|DR958407.1|DR958407
EST:     TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTTCCCGAAAAAG                         TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAG
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAG
EST: gi|76288198|gb|DV027766.1|DV027766
EST:     TCAA-TATAAAGTTCAGGCACAACAGAGGCATCCCCCCTGCCCGAAAAAG                         TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCC
genomic: TCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCC-TGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCC
EST: gi|78083978|gb|DV512371.1|DV512371
EST:     TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG                         TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAG
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAG
EST: gi|18166650|gb|BM336489.1|BM336489
EST:     TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG                         TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAG
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAG
EST: gi|78085072|gb|DV513465.1|DV513465
EST:     TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG                         TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAG
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAG
EST: gi|76288197|gb|DV027765.1|DV027765
EST:     TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG                         TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAG
genomic: TTCAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAG
EST: gi|86467324|gb|DY233694.1|DY233694
EST:     CAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAG                         TGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAG
genomic: CAAATATAAAGTTCAGGCACAACAGAGGCATCCCCCTGCCCGAAAAAGgtaaagccga ... tttccaatagTGATGGGCCATCTCAGCTATCGGTTTCTTCAACTGGGTCCGGCAATGAG