1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AACTTATCAAATAGGCAAAAACCTGGATGTGGAAAAGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGGgtaaatttgcatttcttctcagagcctttagttatgctgcttgctttcatgaattttttaatcaatatgttttccaattttcacag
species | Zea mays |
transcript | GRMZM2G330772_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGATGTGGAAAAGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGG AGCAGTGAAAAAGAAATTGAAGGAGCGGATGGATGACTTTCAGEST: gi|60359751|gb|DN226724.1|DN226724
genomic: GGATGTGGAAAAGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGGgtaaatttgc ... attttcacagAGCAGTGAAAAAGAAATTGAAGGAGCGGATGGATGACTTTCAG
EST: GGATGTGGAAAAGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGG AGCAGTGAAAAAGAAATTGAAGGAGCGGATGGATGACTTTCAGEST: gi|211425646|gb|FL363236.1|FL363236
genomic: GGATGTGGAAAAGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGGgtaaatttgc ... attttcacagAGCAGTGAAAAAGAAATTGAAGGAGCGGATGGATGACTTTCAG
EST: GGATGTGGAAAAGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGG AGCAGTGAAAAAGAAATTGAAGGAGCGGATGGATGACTTTCAGEST: gi|211262997|gb|FL346818.1|FL346818
genomic: GGATGTGGAAAAGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGGgtaaatttgc ... attttcacagAGCAGTGAAAAAGAAATTGAAGGAGCGGATGGATGACTTTCAG
EST: GATGGTGGAAAAGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGG AGCAGTGAAAAAGAAATTGAAGGAGCGGATGGATGACTTTCAGEST: gi|211531082|gb|FL312439.1|FL312439
genomic: GATG-TGGAAAAGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGGgtaaatttgc ... attttcacagAGCAGTGAAAAAGAAATTGAAGGAGCGGATGGATGACTTTCAG
EST: GGATGTGGAAAAGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGG AGCAGTGAAAAAGAAATTGAAGGAGCGGATGGATGACTTTCAG
genomic: GGATGTGGAAAAGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGGgtaaatttgc ... attttcacagAGCAGTGAAAAAGAAATTGAAGGAGCGGATGGATGACTTTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTTATCAAATAGGCAAAAACCTGGATGTGGAAAAGGTTCTGCCGTGGACCGATCAAGAGAGCAAACTACTGGgtaaatttgcatttcttctcagagcctttagttatgctgcttgctttcatgaattttttaatcaatatgttttccaattttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA