1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAGTTATGGAAATAATGGGAGCACTAAAATCTACAAGCCACTCGGCTTCACATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAGgtgataatttgctggacatgcatctgtaaatgtttttttaacacattgagatgacataacagttgattggtactactgaatcacttgatctaaccgttcgtcgttgttgtatacag
species | Zea mays |
transcript | GRMZM2G327635_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAG GGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCTEST: gi|211106195|gb|FL465693.1|FL465693
genomic: ATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAGgtgataattt ... ttgtatacagGGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCT
EST: CATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAG GGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCTEST: gi|31356664|gb|CD441021.1|CD441021
genomic: CATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAGgtgataattt ... ttgtatacagGGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCT
EST: CATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAG GGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCTEST: gi|211500498|gb|FL437355.1|FL437355
genomic: CATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAGgtgataattt ... ttgtatacagGGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCT
EST: CATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAG GGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCTEST: gi|60291773|gb|DN190012.1|DN190012
genomic: CATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAGgtgataattt ... ttgtatacagGGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCT
EST: CTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAG GGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCTEST: gi|24773487|gb|CA408741.1|CA408741
genomic: CTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAGgtgataattt ... ttgtatacagGGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCT
EST: CATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAG GGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCTEST: gi|24934826|gb|CA453044.1|CA453044
genomic: CATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAGgtgataattt ... ttgtatacagGGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCT
EST: CATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAG GGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCTEST: gi|60346943|gb|DN213916.1|DN213916
genomic: CATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAGgtgataattt ... ttgtatacagGGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCT
EST: CATCTGAACTGGTTTTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAG GGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCTEST: gi|211106194|gb|FL465692.1|FL465692
genomic: CATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAGgtgataattt ... ttgtatacagGGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCT
EST: CATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAG GGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCTEST: gi|24764781|gb|CA399943.1|CA399943
genomic: CATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAGgtgataattt ... ttgtatacagGGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCT
EST: CATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAG GGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCTEST: gi|5055505|gb|AI734392.1|AI734392
genomic: CATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAGgtgataattt ... ttgtatacagGGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCT
EST: TAGTCGTGATCTGCTGAGCTCACCATCACAAGAG GGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCTEST: gi|71441837|gb|DR822887.1|DR822887
genomic: TAGTCGTGATCTGCTGAGCTCACCATCACAAGAGgtgataattt ... ttgtatacagGGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCT
EST: CATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAG GGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCTEST: gi|16917273|gb|BM073212.1|BM073212
genomic: CATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAGgtgataattt ... ttgtatacagGGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCT
EST: CATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAG GGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCT
genomic: CATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAGgtgataattt ... ttgtatacagGGTAGAAAATATGAGCTTGTTGCAACCATCACTCATCATGGGAGGGACCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTTATGGAAATAATGGGAGCACTAAAATCTACAAGCCACTCGGCTTCACATCTGAACTGGTTCTTAGTCGTGATCTGCTGAGCTCACCATCACAAGAGgtgataatttgctggacatgcatctgtaaatgtttttttaacacattgagatgacataacagttgattggtactactgaatcacttgatctaaccgttcgtcgttgttgtatacag
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