1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGAGCAAGAAACCTTCCCACATGATGCTTTGGAGGCTACTGCATGGACTGAAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgtttccaaatgttttgtaccaccccccgttcccattggatgttctccttggagttctggacctgtattatagtggctgctaactgtagctgttttcag
species | Zea mays |
transcript | GRMZM2G325131_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAACATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32926357|gb|CF031169.1|CF031169
genomic: TACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: ACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|78105962|gb|DV524380.1|DV524380
genomic: ACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32926358|gb|CF031170.1|CF031170
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: ACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|16920775|gb|BM074824.1|BM074824
genomic: ACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|40334289|gb|CK368359.1|CK368359
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|31354238|gb|CD438595.1|CD438595
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|44901120|gb|CK827665.1|CK827665
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32925173|gb|CF029985.1|CF029985
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: TACAAACACATCCAG GGTGTCCAATTCCGCCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|211331403|gb|FL462816.1|FL462816
genomic: TACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|18163922|gb|BM333761.1|BM333761
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|5740708|gb|AI948398.1|AI948398
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|211412150|gb|FL109914.1|FL109914
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCAAAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCSGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|149102824|gb|EE288168.2|EE288168
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|211435759|gb|FL463295.1|FL463295
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AGATGGACTTATCATGGTTGCTCGCCACAAGAAGTACAAACACATCCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATEST: gi|110202087|gb|EC883984.1|EC883984
genomic: AGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACAT-CCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAAT
EST: AAGATGGACTTATCATGGCTGCTCGCCCCAAGAAGTACAAACACATCCAG GGTGTCCAATTCCCCCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|24769166|gb|CA404295.1|CA404295
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|37389434|gb|CF631937.1|CF631937
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32925121|gb|CF029933.1|CF029933
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: ACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|211412147|gb|FL109911.1|FL109911
genomic: ACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGSTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|37377729|gb|CF625495.1|CF625495
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32924671|gb|CF029483.1|CF029483
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: TACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|18173984|gb|BM349372.1|BM349372
genomic: TACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|18168211|gb|BM338057.1|BM338057
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|78113402|gb|DV531794.1|DV531794
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|33103571|gb|CF063531.1|CF063531
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: GTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32926406|gb|CF031218.1|CF031218
genomic: GTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: ACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32942025|gb|CF046844.1|CF046844
genomic: ACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: GTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32925654|gb|CF030466.1|CF030466
genomic: GTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: ACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32925818|gb|CF030630.1|CF030630
genomic: ACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: TACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|86469587|gb|DY235957.1|DY235957
genomic: TACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|110215812|gb|EC897710.1|EC897710
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32925314|gb|CF030126.1|CF030126
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: TACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|211399741|gb|FL461917.1|FL461917
genomic: TACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|78021212|gb|DV489599.1|DV489599
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|113701050|gb|EE678554.1|EE678554
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|44901121|gb|CK827666.1|CK827666
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|32926489|gb|CF031301.1|CF031301
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: ACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATCEST: gi|211412146|gb|FL109910.1|FL109910
genomic: ACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
EST: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAG GGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
genomic: AAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgt ... ctgttttcagGGTGTCCAATTCCACCCGGAGAGCATCATCACCCCTGAAGGCAAGAAAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCAAGAAACCTTCCCACATGATGCTTTGGAGGCTACTGCATGGACTGAAGATGGACTTATCATGGCTGCTCGCCACAAGAAGTACAAACACATCCAGgtacctctgtttccaaatgttttgtaccaccccccgttcccattggatgttctccttggagttctggacctgtattatagtggctgctaactgtagctgttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT