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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTAAATTTTCAGATTTGACATCTAGACGTGATCGCTGTGGATGCAAGCCTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaagatgtttttatatgtaattctgaagctcaagaaatatacgcagttcttggtgcttcccactggatgactccatttgctatgcag

Basic information

species Zea mays
transcript GRMZM2G321940_T04
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G321940_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA04G26230.1 (Glycine max), 5'ss of exon 9
CACTAAATTTTCAGATTTGACATCTAGACGTGATCGCTGTGGATGCAAGCCTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaagatgtttttatatgtaattctgaagctcaagaaatatacgcagttcttggtgcttcccactggatgactccatttgc---tatgcag----
  ||||||| ||||| || || ||||||||||| |||||||| ||||| ||||||||||||||||| || ||||| |||||||| || ||||||||| | ||||||       ||||  |||    |       |      | ||| |    ||  | |    ||  |    | || | | | |||   |||| ||    
TGCTAAATTCTCAGACTTAACTTCTAGACGTGACCGCTGTGGTTGCAAACCTACAAAAGAAGATGTCAAAAGATGCTTCATGTTGGAATTTGACAGAACTgtaagtttccggattttattattctttctcttgtcctgttcagtattctgttttgatcgcatgtcagaaaacaggatttcttatgccggtatgtaggagt

upper sequence: GRMZM2G321940_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA19G31560.1 (Glycine max), 5'ss of exon 8
CACTAAATTTTCAGATTTGACATCTAGACGTGATCGCTGTGGATGCAAGCCTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaa-agatgtttttatatgtaatt----ctgaagctcaagaaatatacgcagttcttggtgcttcccactggatgactccatttgctatgcag--
||| |||||||| |||||||| || ||||||||| | ||||| ||||||||||||||||||||| |||| ||||| |||||||| |||||||| ||| | || ||| | || ||  || |  | |  ||    |  |        |  |  | |      ||  |  || | | |  ||   |  | ||| |        
CACCAAATTTTCTGATTTGACTTCAAGACGTGATAGGTGTGGCTGCAAGCCTACAAAAGAAGATCTTAAAAGATGCTTCATGTTGGATTTTGATAGATCTgtgagttatagttgccttcaagtattcttgttaccaatttcttgtaggttgatgagtaaattattatttgcaattacattcttatacttgttgcatgttg

upper sequence: GRMZM2G321940_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA03G28810.1 (Glycine max), 5'ss of exon 6
CACTAAATTTTCAGATTTGACATCTAGACGTGATCGCTGTGGATGCAAGCCTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaagatgtttttatatgtaattctgaagctcaagaaatatacgcagttcttggtgcttcccactggatgactccatt-tgctatgcag-------
||| |||||||| |||||||| || ||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| | |||||||    |  | || ||      |||    |     |  |||||  | | |  | | ||||    |  || | |  ||| |  | ||          
CACCAAATTTTCTGATTTGACTTCAAGACGTGATCGATGTGGCTGCAAGCCTACAAAAGAAGATGTTAAAAGATGCTTCATGTTGGATTTTGATAGATCTgtaagtactagttgtcttttacacg-ctctagtcccttctagttatacttattaccagtttcttctaggttaataagtaaattattatttgtgattacatt

upper sequence: GRMZM2G321940_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA11G20930.1 (Glycine max), 5'ss of exon 8
CACTAAATTTTCAGATTTGACATCTAGACGTGATCGCTGTGGATGCAAGCCTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaa--agatgtttttatatgtaattctgaagc-tcaagaaatatacgcagttcttggtgcttcccactggatgactccatttgctatgcag----
  ||||||| ||||| || || ||||||||||| |||||||| ||||| ||||||||||||||||| || ||||| |||||||| || ||||| ||| | ||||||     ||| || ||||   |  | |||     |  ||  || | |   | |  |    |     || ||||  ||      | |||| ||    
TGCTAAATTCTCAGACTTAACTTCTAGACGTGACCGCTGTGGTTGCAAACCTACAAAAGAAGATGTCAAAAGATGCTTCATGTTGGAATTTGATAGATCTgtaagtttccggattttattattctttgtcctgtcctgttcagttatctgctttgattgtatgtcagaaaacaggatttcttataccggtatgtaggagt

upper sequence: GRMZM2G321940_T04 (Zea mays), 5'ss of exon 6
lower sequence: AT2G41451.1 (Arabidopsis thaliana), 5'ss of exon 8
CACTAAATTTTCAGATTTGACATCTAGACGTGATCGCTGTGGATGCAAGCCTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaagatgtttttatatgtaattctgaagctcaagaaatatacgcagttcttggtgcttcccactggatgactccatttgcta-tgcag
| | |||||||||||| | || || ||||||||||| ||||| ||||| || |||||| ||||||| ||||||||||||||| |||| ||||||||||| |||||  |    ||||| || |||  || ||    || |  | |||    |||||||| | | || || |   |   |   |||| |  |||||
CTCGAAATTTTCAGATCTTACTTCAAGACGTGATCGATGTGGCTGCAAACCAACAAAAAAAGATGTCAAGAGATGTTTCATGCTAGACTTTGACAGAGCCgtaagcta----gttttgatttgt--ttatg----tcgattagtat----agttcttg-ttcatcacattttgtatttgtttttgtttctgcag

upper sequence: GRMZM2G321940_T04 (Zea mays), 5'ss of exon 6
lower sequence: AT3G08550.1 (Arabidopsis thaliana), 5'ss of exon 8
CACTAAATTTTCAGATTTGACATCTAGACGTGATCGCTGTGGATGCAAGCCTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaagatgtttttatatgtaattctgaagctca-agaaatatacgcagttcttggtgcttcccactggatgactccatttgctatgcag------------------
  | |||||||| || || ||||| || |||||||| ||||| || ||||||||||||||||| || || ||||| || ||||| || ||||||||| | || || |    | ||||  ||     |    |||  |  ||  || |    |  |||   |  ||| |      | || |  |||   |||| |                  
TTCAAAATTTTCTGACTTAACATCCAGGCGTGATCGATGTGGCTGTAAGCCTACAAAAGAAGACGTGAAAAGATGCTTTATGTTGGACTTTGACAGATCTgtgagca----tcttttcttaaaatctctaaaagtccttagtcatttcttaaaatctctatatttcacttcctcttaccct-tttatgatgctgtatggatcaacattgtag

upper sequence: GRMZM2G321940_T04 (Zea mays), 5'ss of exon 6
lower sequence: AT3G57200.1 (Arabidopsis thaliana), 5'ss of exon 8
CACTAAATTTTCAGATTTGACATCTAGACGTGATCGCTGTGGATGCAAGCCTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaagatgtttttatatgtaattctgaagctcaagaaatatacgcagttcttggtgcttcccactggatgactccatttgctatgcag
  | | |||||||||| | || || ||||||||||| ||||| || ||||| || ||||  ||||| ||||||||||||||| |||| ||||||||||| || |||  |||| || |  | | |   | |  |  ||  | |   |   | |   |   |  |  |  ||    |    ||  ||        
TCCCAGATTTTCAGATCTTACTTCAAGACGTGATCGTTGTGGCTGTAAGCCCACTAAAGTGGATGTCAAGAGATGTTTCATGCTAGAGTTTGACAGAGCTgtgagtggagat-ttatagttttttgctttatatttcctgcatcgttttccgaaatatatagtcacagctcttggctatcacatgtag-----

upper sequence: GRMZM2G321940_T04 (Zea mays), 5'ss of exon 6
lower sequence: Vv13s0019g01720.t01 (Vitis vinifera), 5'ss of exon 8
CACTAAATTTTCAGATTTGACATCTAGACGTGATCGCTGTGGATGCAAGCCTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagt---aaagatgtttttatatgtaattctgaagctcaagaaata----tacgcagttcttggtgcttcccactggatgactccatttgctatgcag
||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||| || ||||| |||||||| || ||||||||||| || |||   | |  | ||||| |    | |        ||    | ||    ||    |  |     | |   |   ||   ||   | |    |  | |
CACTAAATTTTCAGACTTGACTTCTAGACGTGATCGTTGTGGCTGCAAGCCTACAAAGGAGGATGTCAAAAGATGCTTCATGTTGGAGTTTGACAGAGCCgtgagtttaatacctttttttgttctcactctcttctttctgccactactactagattggccgcaaggatggacttagggaaaccataatcagcaatctg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60337560|gb|DN204533.1|DN204533
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|149104435|gb|EE289879.2|EE289879
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|60352924|gb|DN219897.1|DN219897
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|18649239|gb|BM498058.1|BM498058
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|18649487|gb|BM498306.1|BM498306
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|22489745|gb|BU049668.1|BU049668
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|71757408|gb|DR955345.1|DR955345
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|88748392|gb|DY532533.1|DY532533
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|9566442|gb|BE475951.1|BE475951
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|78544463|gb|DV621961.1|DV621961
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|7145435|gb|AW506916.1|AW506916
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|74233108|gb|DT641022.1|DT641022
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|18450404|gb|BM428682.1|BM428682
EST:     AAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGCCAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: AAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|21088906|gb|BQ401219.1|BQ401219
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|67023967|gb|CO452716.1|CO452716
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|60359017|gb|DN225990.1|DN225990
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|211475621|gb|FL459212.1|FL459212
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAAT-STTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|60358862|gb|DN225835.1|DN225835
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|91052839|gb|EB163257.1|EB163257
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|78123713|gb|DV542097.1|DV542097
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|148966856|gb|EE017970.2|EE017970
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|20811191|gb|BQ295669.1|BQ295669
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGC
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGC
EST: gi|148966910|gb|EE018038.2|EE018038
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|60351412|gb|DN218385.1|DN218385
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|166471835|gb|EG186651.1|EG186651
EST:     TTTCATGTTAAGATTTTAGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: TTTCATGTT-AGATTTT-GACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|149007485|gb|EE040231.2|EE040231
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|74235637|gb|DT643551.1|DT643551
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|87153298|gb|DY398087.1|DY398087
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|78123802|gb|DV542186.1|DV542186
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
EST: gi|148966540|gb|EE017564.2|EE017564
EST:     CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCA                         GCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG
genomic: CTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaag ... tgctatgcagGCTTTTATAATTGCATCAACTGCTAGTGAAGAAGAAATGCTTCGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACTAAATTTTCAGATTTGACATCTAGACGTGATCGCTGTGGATGCAAGCCTACAAAAGAAGATGTTAAGAGATGTTTCATGTTAGATTTTGACAGAGCAgtaagtaaagatgtttttatatgtaattctgaagctcaagaaatatacgcagttcttggtgcttcccactggatgactccatttgctatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA