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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGAAGGCAACCCTTTGTGTCCATCCAGATAAAGTGCAGCAAAGAGGTGCTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctttggtcatcttgctttataaattagttacttatctacagttgcttaagtttcaatatttttgttggtatggctgctgctatactcccaagttctgttagcctcagtcacctctgggagactgggactatgttgatgtttctgcattgctgtggtgcttcacag

Basic information

species Zea mays
transcript GRMZM2G316635_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G316635_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g44310.1 (Oryza sativa), 5'ss of exon 7
CAGGAAGGCAACCCTTTGTGTCCATCCAGATAAAGTGCAGCAAAGAGGTGCTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctttggtcatcttgctttataaattagttacttatctacagttgcttaagtttcaatatttttgttggtat-ggctgctgctatactcccaagttctgttagcctcagtcacctctgggagactgggactatgttgatgtttctgcattgctgtggtgcttcacag
 || | ||||||||||||||||||||| |||||| | || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||   || |||| |||  |    ||||  ||    |  |  | | ||  |  || | |||| |        |   |||  ||   |||||   | |  ||   |                                                                     
TAGAAGGGCAACCCTTTGTGTCCATCCCGATAAACTACAACAAAGGGGTGCTACAATCAGACAGAAATATATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtacattatttgttcacatc---ttatgcatattcttgtggttttcatct--ttgaatttccacccccagttacttatcagcaattgctaattttcagagaagtt--------------------------------------------------------------------

upper sequence: GRMZM2G316635_T03 (Zea mays), 5'ss of exon 6
lower sequence: Vv18s0001g12770.t01 (Vitis vinifera), 5'ss of exon 6
CAGGAAGGCAACCCTTTGTGTCCATCCAGATAAAGTGCAGCAAAGAGGTGCTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctttggtcatcttgctttataaattag-ttacttatctacagttgct--taagtttcaatatttttgttggtatggctgctgctatactcccaagttctgttagcctcagtcacctctgggagactgggactatgttgatgtttctgcattgctgtggtgcttcacag
| ||||||| || |||||||| ||||| |||||  |||||||  | |||||||  ||    ||||| ||||| ||||||||||| ||||||||| |  |||| || |     ||  ||||  ||| |  ||||| |||  |||||  |   |||  | ||    || | |   |  | |     |  ||   || | || |  |                                                                       
CCGGAAGGCCACTCTTTGTGTGCATCCTGATAAGTTGCAGCAGCGTGGTGCTAGCATTCAGCAGAAGTACATATGTGAGAAGGTTTTTGATCTTTTACAGgtatgct-----gttgtcttcttttgtgcattagcttaagtatctttatgggctagtgagcactaaaactgaagaggtttcaatttttgtagtaatgcctaaata----------------------------------------------------------------------

upper sequence: GRMZM2G316635_T03 (Zea mays), 5'ss of exon 6
lower sequence: Vv04s0023g02070.t01 (Vitis vinifera), 5'ss of exon 7
CAGGAAGGCAACCCTTTGTGTCCATCCAGATAAAGTGCAGCAAAGAGGTGCTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctttg---gtcatcttgctttataaattagttacttatctacagttgcttaagtttcaatatttttgttggtatggctgctgctatactcccaagttctgttagcctcagtcacctctgggagactgggactatgttgatgtttctgcattgctgtggtgcttcacag
 || || || || |||||||| ||||| || ||| | || ||||| ||||| |  ||   |||||| ||||| ||||| ||||| ||||||||||| |||||||||     |   | ||| ||  ||   |||      | | || |    ||    ||  |  |||| ||    |  ||   ||| | | || |    | |  || | | |                                                               
TAGAAAAGCCACTCTTTGTGTTCATCCTGACAAATTACAACAAAGGGGTGCAAGCATTCAACAGAAGTACATATGTGAAAAGGTTTTTGATCTTCTAAAGgtgtgtcaccagtctgccattttctttcccaaa------attgatttctgatta---aatgtctaatacttacact--taaaactgtttccatgcctataggc-ctctaaac---------------------------------------------------------------