1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactttatccatcctatcacaatacttcaggttgcatatgtctcatgattgctgtgacctgctctgtgcag
species | Zea mays |
transcript | GRMZM2G314679_T06 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTAEST: gi|60356728|gb|DN223701.1|DN223701
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTTTAEST: gi|32849532|gb|CD989213.1|CD989213
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG ACGATACCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTAEST: gi|15323565|gb|BI478787.1|BI478787
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTAEST: gi|4681229|gb|AI629899.1|AI629899
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTAEST: gi|32908218|gb|CF013031.1|CF013031
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: TAAGGTTGCAACCAATGCTGTTGATGGTTCTGGTGCCCTTTTCTGAGCAG ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTAEST: gi|32938645|gb|CF043464.1|CF043464
genomic: TAAGGTTGCAACCAATGCTGTTGATGGTTCTG-TGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTAEST: gi|91873753|gb|EB403710.1|EB403710
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTAEST: gi|5901227|gb|AW042327.1|AW042327
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTAEST: gi|16925380|gb|BM078448.1|BM078448
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG ACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTAEST: gi|6227104|gb|AW155808.1|AW155808
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCACTAGCCACAGCTAGGGAGCACCTTGCAAGATCTCTA
EST: NTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAG ACGATATCTCAGGCAC
genomic: GTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactt ... ctctgtgcagACGATATCTCAGGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCATCCTGGAAACAGATGCAAACACCATTGCTGGTAAGGTTGCAACCAATGCTGTTGATGGTTCTGTGCCCTTTTCTGAGCAGgtaattactttatccatcctatcacaatacttcaggttgcatatgtctcatgattgctgtgacctgctctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG