1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGAGCCCGAGGAGCTTCGAGAGGCTCTGGTGGACGACGGGGCGGCCGACAGCATGGAGGAAGTGGTGAACGACATACTGCAAGAAGTCGACACCGACAAGgtcactgacactctcatgtctctagtaggacgggttattttggtcctctggtcgtctgatgaacgagtgtcgtccgtctcttgtccgtttacatcgatgtgcag
species | Zea mays |
transcript | GRMZM2G311220_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCATCGACGAAKTGGTGAACGACATACTGCAAGAAGTCGACACCGACAAG GACGGCAAGATCAGCTACGAGGAGTTTGTGGCGATGATGAAGACCGGCACEST: gi|211215232|gb|FL184710.1|FL184710
genomic: GCATGGAGGAAGTGGTGAACGACATACTGCAAGAAGTCGACACCGACAAGgtcactgaca ... cgatgtgcagGACGGCAAGATCAGCTACGAGGAGTTTGTGGCGATGATGAAGACCGGCAC
EST: TCATCGAGGAAGTGGTGAACGACATACTGCAAGAAGTCGACACCGACAAG GACGGCAAGATCAGCTACGAGGAGTTTGTGGCGATGATGAAGACCGGCA
genomic: GCATGGAGGAAGTGGTGAACGACATACTGCAAGAAGTCGACACCGACAAGgtcactgaca ... cgatgtgcagGACGGCAAGATCAGCTACGAGGAGTTTGTGGCGATGATGAAGACCGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGCCCGAGGAGCTTCGAGAGGCTCTGGTGGACGACGGGGCGGCCGACAGCATGGAGGAAGTGGTGAACGACATACTGCAAGAAGTCGACACCGACAAGgtcactgacactctcatgtctctagtaggacgggttattttggtcctctggtcgtctgatgaacgagtgtcgtccgtctcttgtccgtttacatcgatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT