1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTAAGATTGGCAGACCTGGGTATAAAGTAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattccttgccaatcatcttttactgatttcagttaagttacttgttgtttgcattttaaagattatttcacgtcgtagtatctttttatatata...
species | Zea mays |
transcript | GRMZM2G307906_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATGEST: gi|211458274|gb|FL247609.1|FL247609
genomic: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
EST: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATGEST: gi|211458279|gb|FL247614.1|FL247614
genomic: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
EST: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATGEST: gi|211458288|gb|FL247623.1|FL247623
genomic: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
EST: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATGEST: gi|211458277|gb|FL247612.1|FL247612
genomic: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
EST: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGEST: gi|211294858|gb|FL410176.1|FL410176
genomic: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGG
EST: ATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATGEST: gi|211298410|gb|FL370609.1|FL370609
genomic: ATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
EST: GATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATGEST: gi|78117919|gb|DV536306.1|DV536306
genomic: GATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
EST: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCCAGGCACCGTTTCATGEST: gi|5268368|gb|AI770332.1|AI770332
genomic: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
EST: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATGEST: gi|211397249|gb|FL247600.1|FL247600
genomic: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
EST: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATGEST: gi|211458281|gb|FL247616.1|FL247616
genomic: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
EST: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGAAATCGAAGATEST: gi|78091778|gb|DV520152.1|DV520152
genomic: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGAT
EST: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATGEST: gi|211397251|gb|FL247602.1|FL247602
genomic: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
EST: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATGEST: gi|74241998|gb|DT649912.1|DT649912
genomic: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
EST: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATGEST: gi|211397255|gb|FL247606.1|FL247606
genomic: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
EST: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATGEST: gi|74236877|gb|DT644791.1|DT644791
genomic: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
EST: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATGEST: gi|211458286|gb|FL247621.1|FL247621
genomic: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
EST: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATGEST: gi|211460798|gb|FL247624.1|FL247624
genomic: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
EST: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATGEST: gi|211397254|gb|FL247605.1|FL247605
genomic: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
EST: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATGEST: gi|211397257|gb|FL247608.1|FL247608
genomic: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
EST: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA ATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCCAGGCACCGTTTCATGEST: gi|211458275|gb|FL247610.1|FL247610
genomic: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
EST: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAA AYTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
genomic: TAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattc ... ttcattttagATTGGTTACCCGGAAATCGAAGATAATTGCAAGCCAAGGCACCGTTTCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAAGATTGGCAGACCTGGGTATAAAGTAACCAAACAATATGATCCTGAGATGAAGCAACACTCGTTTCTTTTTGAAgttagtattccttgccaatcatcttttactgatttcagttaagttacttgttgtttgcattttaaagattatttcacgtcgtagtatctttttatatata
- - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA