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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCCTGATAAGTACATCAAACATTGGTCAGCTGTTAAACCAAAGACGGGGGTCCCATATACAATTGACATTGGATATGAACGCTTTCTTGGGCCAGAGgtttattgctatttctgtcatcaaaactacaaatagttttagtttttttgttcccaaactattcatccaaaatggtataatattatggccagtaatcatc...

Basic information

species Zea mays
transcript GRMZM2G305332_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G305332_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g03440.1 (Oryza sativa), 5'ss of exon 6
GAAGCCTGATAAGTACATCAAACATTGGTCAGCTGTTAAACCAAAGACGGGGGTCCCATATACAATTGACATTGGATATGAACGCTTTCTTGGGCCAGAGgtttattgctatttctgtcatcaaaactacaaatagttttagtttttttgttcccaaactattcatccaaaatggtataatattatggccagtaatcatc-
 |||||||||||||| |||||||| ||||| ||| |||| || ||||| || |||||||| |||||||| ||||||||||| || |||||||| |||||||||| || | |||||| ||||| |   | ||  |  |||||||  | ||| | | ||   |         |||  |    |     |||  |  | | |  
AAAGCCTGATAAGTATATCAAACACTGGTCTGCTATTAAGCCCAAGACTGGAGTCCCATACACAATTGATATTGGATATGAGCGTTTTCTTGGACCAGAGgtttgttcccatttctatcatctagtttccatgttcttttagtagtgttgctac-aattgacatgataccaatcatgctttgaacaggcgtgctaccctac

upper sequence: GRMZM2G305332_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA05G30630.1 (Glycine max), 5'ss of exon 5
GAAGCCTGATAAGTACATCAAACATTGGTCAGCTGTTAAACCAAAGACGGGGGTCCCATATACAATTGACATTGGATATGAACGCTTTCTTGGGCCAGAGgtttattgctatttctgtcatcaaaactacaaatagttt---tagtttttttgttcccaaactattcatccaaaatggtataatattatggccagtaatcatc
  |||| |  ||||| ||||| || |||  || | ||||||||||||||||||  |||||| |   ||| ||||| |||||||| |||||||| || ||||||| || ||||  |||   |   || |     || | |   ||  |   |  |||  |    |  | |||  | || | ||    ||       ||  |   
AGAGCCAGCCAAGTATATCAAGCACTGGAGAGGTATTAAACCAAAGACGGGGGCACCATATTCCTGTGATATTGGCTATGAACGATTTCTTGGCCCTGAGgtttgtt-ctatggctgctctttgaattttctctattatggataactgaatctttcttaggggacacctccggattgttctatggctacttgttttatacc--

upper sequence: GRMZM2G305332_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA08G13780.1 (Glycine max), 5'ss of exon 5
GAAGCCTGATAAGTACATCAAACATTGGTCAGCTGTTAAACCAAAGACGGGGGTCCCATATACAATTGACATTGGATATGAACGCTTTCTTGGGCCAGAGgtttattgctatttctgtcatcaaaactacaaatagttttagtttttttgttcccaaactattcatccaaaatggtataatattatggccagtaatcatc---
  | || |  ||||||||||| ||||||  || | ||||||||||||||||||  |||||| ||  ||| ||||| ||||| || |||||||| || ||||||| || ||||       ||  | | |     || || ||||  |    |   |    ||||          ||         | ||  | |     |    
AGAACCAGGCAAGTACATCAAGCATTGGAGAGGTATTAAACCAAAGACGGGGGCACCATATTCATGTGATATTGGCTATGAGCGATTTCTTGGCCCTGAGgtttgtt-ctatgggcactatttacattttctcta-ttatagtcataa-atctgccttttatttggggggggggggggggggggagggggacttggattggag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110965811|gb|EE185711.1|EE185711
EST:     GGGTCCCATATACAATTGACATTGGATATGAACGCTTTCTTGGGCCAGAG                         ATCTTCTTCAATCCTGAGATTTACTCTGCCGACTTCTCCACTCCTTTACCT
genomic: GGGTCCCATATACAATTGACATTGGATATGAACGCTTTCTTGGGCCAGAGgtttattgct ... acaaatgcagATCTTCTTCAATCCTGAGATTTACTCTGCCGACTTCTCCACTCCTTTACCT
EST: gi|93281998|gb|EB674262.1|EB674262
EST:     GGGTCCCATATACAATTGACATTGGATATGAACGCTTTCTTGGGCCAGAG                         ATCTTCTTCAATCCTGAGATTTACTCTGCCGACTTCTCCACTCCTTTACCT
genomic: GGGTCCCATATACAATTGACATTGGATATGAACGCTTTCTTGGGCCAGAGgtttattgct ... acaaatgcagATCTTCTTCAATCCTGAGATTTACTCTGCCGACTTCTCCACTCCTTTACCT