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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATTTGCTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACGgtgctctccctctcccccctctctctctctctccctccctcaatggttattggttggttaattttgttgtgtgccattgcag

Basic information

species Zea mays
transcript GRMZM2G305254_T04
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G305254_T07 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 5'ss of exon 6
GATATTTGCTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACGgtgctctccctctcccccctctctctctctctccctccctcaatggttattggttggttaa---ttttgttgt-gtgccattgcag
||||||||||||||| |||||||| || || || || |||||||||||||||||||||||  |||  |||||  | |     | | |     ||| ||     |||  ||  || |||    |||  ||||  || ||||||||
GATATTTGCTTTGGCAACTGTCTTGAGTTCAGTGCTAATCTACAACCTTCCTGAGACGgtaatctatctctctactcatatacacgcataaactcacttgtctgtttgtgtgtgcttagacttttacttgttatgtcattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481497|gb|EY254329.1|EY254329
EST:     CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACG                         GTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAA
genomic: CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACGgtgctctccc ... gccattgcagGTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAA
EST: gi|149107780|gb|EE292141.2|EE292141
EST:     CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACG                         GTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAA
genomic: CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACGgtgctctccc ... gccattgcagGTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAA
EST: gi|148936664|gb|EC880790.2|EC880790
EST:     CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACG                         GTACGTGAAGCTGATATATCTAGGCTTTCAT
genomic: CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACGgtgctctccc ... gccattgcagGTACGTGAAGCTGATATATCTAGGCTTTCAT
EST: gi|19057930|gb|BM736597.1|BM736597
EST:     CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGCCG                         GTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAA
genomic: CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACGgtgctctccc ... gccattgcagGTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAA
EST: gi|18963930|gb|BM660710.1|BM660710
EST:     CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACG                         GTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAA
genomic: CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACGgtgctctccc ... gccattgcagGTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAA
EST: gi|18963438|gb|BM660435.1|BM660435
EST:     CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACG                         GTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAA
genomic: CTTTGGCGACTGTCTTAAGCTCGGTCCTTATCTACAACCTTCCTGAGACGgtgctctccc ... gccattgcagGTACGTGAAGCTGATATATCTAGGCTTTCATTTGCCGTTGAAATTGCTGAA