1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtagataggtacaatatattcattgatgtgtatgtgcgaatattttttctattttttcacatcaatgtcatccaaacattcttactcag
species | Zea mays |
transcript | GRMZM2G303631_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGG GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAAEST: gi|211449604|gb|FL033165.1|FL033165
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
EST: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGG GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAAEST: gi|211156293|gb|FL375842.1|FL375842
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
EST: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTSTAGG GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTEST: gi|32850609|gb|CD990290.1|CD990290
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTT
EST: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGG GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTAEST: gi|91054221|gb|EB164639.1|EB164639
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTA
EST: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGG GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAAEST: gi|101394205|gb|EB819037.1|EB819037
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
EST: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGG GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAAEST: gi|211449603|gb|FL033164.1|FL033164
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
EST: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGG GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAAEST: gi|211449602|gb|FL033163.1|FL033163
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
EST: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGG GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAAEST: gi|211229612|gb|FL380029.1|FL380029
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
EST: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGG GACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAAEST: gi|211212797|gb|FL419176.1|FL419176
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAATGCCCCACTTTCAATGGCGTACAA
EST: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTWACAGCCTGTAGG GACACCTTCCGTGGTAGAGTGTGTGAATTGCCCCACTTT
genomic: ACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtag ... tcttactcagGACACCTTCCGTGGTAGAGTGTGTGAAT-GCCCCACTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATAGAGACAAATGAGTGTCTGAATGACAACGGGGGCTGCTGGCAAGACAAATCTGCTAATGTAACAGCCTGTAGGgtatgtgtagataggtacaatatattcattgatgtgtatgtgcgaatattttttctattttttcacatcaatgtcatccaaacattcttactcag
- - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - GCAAGA