Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCATGCCTGTCTCCAGGCCACAAATGAGTTTATAACTGACTTGCCAGACCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAGgtaccactggcgatgttctacatttttttttccagtttgtcaattataatactgtagcatgtaatttggtcattcttatttgcag

Basic information

species Zea mays
transcript GRMZM2G302195_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G302195_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os12g13460.1 (Oryza sativa), 5'ss of exon 11
CTCCATGCCTGTCTCCAGGCCACAAATGAGTTTATAACTGACTTGCCAGACCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAGgta--ccactggcgatgt-tctacatttttttttccagtttgtcaattata------atactgtagcatgt-aatttggtcattcttatttgcag------------------
 | ||||  |||||||||||  | |||||||| |||| ||| ||||| |||||||| || |||||||||||||||| || ||| |||||| |||||| |||||  | |    | ||   | | || |  ||     |||   |  |||| |      |   |||| |||||  || |  |   ||| ||   | |                  
TTGCATGGTTGTCTCCAGGCTGCTAATGAGTTCATAAATGATTTGCCTGACCACACTGTGTCACCTTGCCCTGCTCCATTTGCTCCTGAATTGAAATAAGgtaggcaaagctcaataagttttcactgcttcccaaagtaaatttattagaccgtttactgtgtaccatgttgatgtaattgatctaatagactgaattttatggatgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32922315|gb|CF027127.1|CF027127
EST:     CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAG                         GTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATTAAGAATGTCACAA
genomic: CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAGgtaccactgg ... ttatttgcagGTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATTAAGAATGTCACAA
EST: gi|32790955|gb|CD943191.1|CD943191
EST:     CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAG                         GTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATTA
genomic: CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAGgtaccactgg ... ttatttgcagGTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATTA
EST: gi|32920326|gb|CF025138.1|CF025138
EST:     CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAG                         GTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATT
genomic: CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAGgtaccactgg ... ttatttgcagGTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATT
EST: gi|32803989|gb|CD956225.1|CD956225
EST:     CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAG                         GTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATTA
genomic: CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAGgtaccactgg ... ttatttgcagGTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATTA
EST: gi|211474396|gb|FL070285.1|FL070285
EST:     CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAG                         GTTGCATGTTGTTTTCTTTCCCMAATGGTCATATCATTAAGAATGTCACAA
genomic: CCACACAGTATCACCTTGCCCTGCTCAATATGCCCCTGAAATGAAATGAGgtaccactgg ... ttatttgcagGTTGCATGTTGTTTTCTTTCCCAAATGGTCATATCATTAAGAATGTCACAA