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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTACTGACAACTCATTGAAGCTTTGGGACTTATCGATGAGTACAGGAAGGATAATTGACAGTCCAGTTCAAACATTTAAGGGGCATACAAATACAAAGgttggataaaacttccacatgtacttgttctcttttcataatattcgtctacaagtggttagtgtctggttttatcttttgtaagtgtaactagtagaat...

Basic information

species Zea mays
transcript GRMZM2G300651_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G300651_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g52640.3 (Oryza sativa), 5'ss of exon 4
ATCTACTGACAACTCATTGAAGCTTTGGGACTTATCGATGAGTACAGGAAGGATAATTGACAGTCCAGTTCAAACATTTAAGGGGCATACAAATACAAAGgttggataaaacttccacatgtacttgttctcttttcataa--tattcgtctacaagtggttagtgtctggttttatcttttgtaagtgtaactagtagaat
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ATCTACTGACAACTCCTTGAAGCTCTGGGACTTGTCCATGAGTCAGGCAAGGATAATTGACAGTCCGCTTCGGACATTTACAGGTCATACAAACACTAAGgttaga-atatcctgcataccttttttgttacggtgcataaacctttctcggggtattgttctggatatggttcttttttatctaa-tataacaatcatcct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5668513|gb|AI932028.1|AI932028
EST:     GGATAATTGACAGTCCAGTTCAAACATTTAAGGGGCATACAAATACAAAG                         GAACTGGGCCATGCTGATGTTCAAAAGAGTTGTCAGAAGTTCATGACATCT
genomic: GGATAATTGACAGTCCAGTTCAAACATTTAAGGGGCATACAAATACAAAGgttggataaa ... tttcattcagGAACTGGGCCATGCTGATGTTCAAAAGAGTTGTCAGAAGTTCATGACATCT
EST: gi|50331719|gb|CO526845.1|CO526845
EST:     GGATAATTGACAGTCCAGTTCAAACATTTAAGGGGCATACAAATACAAAG                         GAACTGGGCCATGCTGATGTTCAAAAGAGTTGTCAGAAGTTCATGACATCT
genomic: GGATAATTGACAGTCCAGTTCAAACATTTAAGGGGCATACAAATACAAAGgttggataaa ... tttcattcagGAACTGGGCCATGCTGATGTTCAAAAGAGTTGTCAGAAGTTCATGACATCT
EST: gi|88748441|gb|DY532582.1|DY532582
EST:     GGATAATTGACAGTCCAGTTCAAACATTTAAGGGGCATACAAATACAAAG                         GAACTGGGCCATGCTGATGTTCAAAAGAGTTGTCAGAAGTTCATGACATCT
genomic: GGATAATTGACAGTCCAGTTCAAACATTTAAGGGGCATACAAATACAAAGgttggataaa ... tttcattcagGAACTGGGCCATGCTGATGTTCAAAAGAGTTGTCAGAAGTTCATGACATCT
EST: gi|76925579|gb|DV170488.1|DV170488
EST:     GGATAATTGACAGTCCAGTTCAAACATTTAAGGGGCATACAAATACAAAG                         GAACTGGGCCATGCTGATGTTCAAAAGAGTTGTCAGAAGTTCATGACATCT
genomic: GGATAATTGACAGTCCAGTTCAAACATTTAAGGGGCATACAAATACAAAGgttggataaa ... tttcattcagGAACTGGGCCATGCTGATGTTCAAAAGAGTTGTCAGAAGTTCATGACATCT
EST: gi|5901335|gb|AW042435.1|AW042435
EST:     GGATAATTGACAGTCCAGNTCAAACATTTAAGGNGCATACCAATACAAAG                         GAACTGGGCCATGCTGAT
genomic: GGATAATTGACAGTCCAGTTCAAACATTTAAGGGGCATACAAATACAAAGgttggataaa ... tttcattcagGAACTGGGCCATGCTGAT