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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGACCCAAGTGTTACCATGATGACCGTGGAGGAAAAGCCAGATGTGACGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatccttttttcttcttgtgagctggcacatactgcatcatagttagttacgggactagtttggttactctgtgcttgtaccttttttgcag

Basic information

species Zea mays
transcript GRMZM2G181359_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g54340.1 (Oryza sativa), 5'ss of exon 6
AATTGACCCAAGTGTTACCATGATGACCGTGGAGGAAAAGCCAGATGTGACGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatccttttttct--------------tcttgtgagctggcacatact---gcatca---tagttagttacgggactagtttg---gttactctgtgct---tgtaccttttttgcag
||||||||||||||||||||||||||| || |||||||| || |||||||| || |||||||| ||||| |||||||| |||||||| |||||||| || ||||   |  ||||||||               || ||  | || || ||| ||   ||||||   |||||||||  ||   || ||||    ||||| | ||||   | |   || ||   ||
AATTGACCCAAGTGTTACCATGATGACAGTTGAGGAAAAACCTGATGTGACATATAATGATGTGGGTGGTTGCAAGGAACAGATTGAAAAAATGCGGGAGgtatactaatcttttttcagttcatatcccttgtcgtgcaaacttgctcatccttgtgcatcaggctagttagttttggacttattttgctatttactgtttgctaattattgtttgttcatag

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 6
AATTGACCCAAGTGTTACCATGATGACCGTGGAGGAAAAGCCAGATGTGACGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatcc----ttttttcttcttgtgagctggcaca-tactgcatcatagttagttacgggactagtttggttactctgtgcttgtaccttttttgcag
||||||||||||||||||||||||||| || || || ||||| |||||||| || |||||||||||||| || |||||||||||||| || ||||| |||||  |||||      ||   |    || | | |||  | | |   | ||   |||||   | ||  ||| |||  ||  | | |  || || ||  |      
AATTGACCCAAGTGTTACCATGATGACAGTTGAAGAGAAGCCTGATGTGACATATAATGATGTTGGTGGTTGTAAGGAGCAGATTGAAAAGATGCGAGAAgttagtgattggaagttcccttgatttttaatctgttataattgcggatgtaagtta--catggtgctaattttatttatttatattt-tatctgctag----

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 6
AATTGACCCAAGTGTTACCATGATGACCGTGGAGGAAAAGCCAGATGTGACGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatcc----ttttttcttcttgtgagctggcacatactgcatcatagttagttacgggactagtttggttactctgtgcttgtaccttttttgcag-
||||||||| ||||||||||||||||| || || || ||||| |||||||| || |||||||||||||| || ||||| |||||||| |||||||| |||||| |||||      ||   |    || | | |||  | | | || |  || |  ||||||  | |  | |   ||| | |    || ||  || | |||   
AATTGACCCTAGTGTTACCATGATGACAGTTGAAGAGAAGCCTGATGTGACATATAATGATGTTGGTGGTTGTAAGGAACAGATTGAAAAAATGCGAGAAgtaagtgattggaagttcccttcatttttaatctgttata-attg-aggat-gcaagttacatggc--gctaatttatttt---tttatattttatctgctag

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 6
AATTGACCCAAGTGTTACCATGATGACCGTGGAGGAAAAGCCAGATGTGACGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatccttttttcttcttgtgagctggcacatactgcatcatagtta-gttacggg--actagtttggttactctgtgcttgtaccttttttgcag
|||||| |||||||| ||||||||||| || || || ||||||||||| || || ||||||||||| || || |||||||||||||| || ||||| |||||| || ||     ||| | ||| |    |  ||  ||        ||| || || ||| |  |||| ||||     ||  |||  |              
AATTGATCCAAGTGTGACCATGATGACTGTTGAAGAGAAGCCAGATGTAACATATAATGATGTTGGCGGTTGTAAGGAGCAGATTGAAAAGATGCGAGAAgtaagtcattggaatttttacttat---tttacatttataatgaagtagataagtcacgtgtcactaatttgtaatttcactgcaag--------------

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA16G01810.1 (Glycine max), 5'ss of exon 6
AATTGACCCAAGTGTTACCATGATGACCGTGGAGGAAAAGCCAGATGTGACGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatccttttttcttcttgtgagctggcacatactgcatcatagttagttacgggactagtttggttactctgtgcttgtaccttttttgcag-
|||||| |||||||| ||||||||||| || || || |||||||||||||| || ||||||||||| || || ||||||||||||||||| |||||||||||| || ||             ||  |  |  |  ||  | ||| ||| |   | | |     ||||  |   | ||    ||||   ||   ||||  
AATTGATCCAAGTGTAACCATGATGACGGTTGAAGAGAAGCCAGATGTGACATATAATGATGTTGGCGGTTGTAAGGAGCAGATTGAGAAGATGCGTGAAgtaagtcat-------------tgaaatttcacttatcttacattataat-gataatga----agttatgcggcactaaatttgtcatttccctgcaag

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 6
AATTGACCCAAGTGTTACCATGATGACCGTGGAGGAAAAGCCAGATGTGACGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtg-atccttttt-----tcttcttgtgagctggcacat--------actgcatcatagttagttacgggactagtttggttactctgtgcttgtaccttttttgcag----------------------------
 ||||| |||||||| ||||||||||| || || || || || |||||||| || |||||||||||||| ||||||||||||||||| || ||||| ||||| |||  || ||||||     | || |||| || |   | ||        || |  || |  ||  |||   |     ||| | | || ||  ||| |  | || |                                 
GATTGATCCAAGTGTAACCATGATGACAGTAGAAGAGAAACCGGATGTGACATATAATGATGTTGGTGGATGCAAGGAGCAGATTGAAAAGATGCGAGAAgtgtgtatattctttttacatttttttttgtcagatcatatatgcatttacaccgtgtctttcttgattaacagctagtttttgatcctgtgaacttctgtccttctcttgtttgctgatatttataactttggctctag

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 6
lower sequence: PP1S152_13V6.2 (Physcomitrella patens), 5'ss of exon 6
AATTGACCCAAGTGTTACCATGATGACCGTGGAGGAAAAGCCAGATGTGACGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgat-----ccttttttcttcttgtgagctggcacatactgcatcatagttagttacgggactagtttggtta-ctctgtgcttgtaccttttttgcag
 |||||||| ||||| || |||||||| || || |||||||||||||| |||||||||||| |||| ||||| ||||| || || || || |||||||| ||  ||||      | | || | || | || |  ||    || ||   |  |    |||| | || |   |||||  | |    | ||| | | | || |   |
GATTGACCCGAGTGTCACTATGATGACAGTAGAAGAAAAGCCAGATGTTACGTACAATGATATTGGAGGCTGTAAGGAACAAATAGAAAAGATGCGTGAGgttagtgaaaccaacttgttattttttcgtaatttga---atgcttggtt-tgtgaagtttctggtcctttttggcgagcaacatacttatgcatgttgtattg

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 6
lower sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 6
AATTGACCCAAGTGTTACCATGATGACCGTGGAGGAAAAGCCAGATGTGACGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatccttttttcttcttgtgagctggcacatactgcatcatagttagttacgggactagtttggttactctgtgcttgtaccttttttgcag---------
 |||||||| || ||||| |||||||| |||||||||||||||||||| || ||||||||| |||||||||| || ||||| || || || |||||||| |||  |||  |    ||  |       |||  |||||| |   | ||  || |||     ||  ||||| | | |   |||          | || ||         
GATTGACCCCAGCGTTACAATGATGACAGTGGAGGAAAAGCCAGATGTCACCTACAATGATATTGGTGGCTGTAAAGAGCAAATAGAAAAGATGCGTGAGgtaaatgaaaccaactttatt------gctttcacatattttctaatgctttgttcgactacatgtttg-tgatttgatgcgatattacgatatgaagctcaccccg

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 6
lower sequence: EFJ13722 (Selaginella moellendorffii), 5'ss of exon 6
AATTGACCCAAGTGTTACCATGATGACCGTGGAGGAAAAGCCAGATGTGACGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatccttttttcttcttgtgagctggcacatactgcatcatagttagttacgggactagtttggttactctgtgcttgtaccttttttgcag
 ||||| || || || || |||||||| |||||||| ||||| ||||| || ||||||||  | || || ||||||||||| || ||||||||||| || |||  |   || |||| | | | ||   || |   |      ||| ||  |  |||||    |||                                 
GATTGATCCGAGCGTCACTATGATGACGGTGGAGGAGAAGCCCGATGTAACTTACAATGACATCGGCGGTTGCAAGGAGCAAATCGAGAAAATGCGGGAGgtaactacaccattttacatttggtttcctcgtcgacg----atcttaactt-ttacgcatatag---------------------------------

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 6
lower sequence: EFJ29161 (Selaginella moellendorffii), 5'ss of exon 6
AATTGACCCAAGTGTTACCATGATGACCGTGGAGGAAAAGCCAGATGTGACGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatccttttttcttcttgtgagctggcacatactgcatcatagttagttacgggactagtttggttactctgtgcttgtaccttttttgcag
 ||||| || || || || |||||||| |||||||| ||||| ||||| || ||||||||  | || || ||||||||||| || ||||||||||| || |||  |   || |||| | | | ||   || |   |      ||| ||  |  |||||    |||                                 
GATTGATCCGAGCGTCACTATGATGACGGTGGAGGAGAAGCCCGATGTAACTTACAATGACATCGGCGGTTGCAAGGAGCAAATCGAGAAAATGCGGGAGgtaactacaccattttacatttggttttctcgtcgacg----atcttaactt-ttacgcatatag---------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148939474|gb|EC884049.2|EC884049
EST:     CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTNCA-GCTTGGTAT
genomic: CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGT-CAAGCTTGGTAT
EST: gi|148930441|gb|EE284947.2|EE284947
EST:     CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
genomic: CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
EST: gi|148986522|gb|EE030276.2|EE030276
EST:     CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTT-GTCAAGCTTGGTATT
genomic: CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
EST: gi|148941059|gb|EC885918.2|EC885918
EST:     CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
genomic: CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
EST: gi|148940274|gb|EC885053.2|EC885053
EST:     CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
genomic: CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
EST: gi|149102256|gb|EE287643.2|EE287643
EST:     CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
genomic: CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
EST: gi|148940455|gb|EC885254.2|EC885254
EST:     CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
genomic: CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
EST: gi|148981623|gb|EE027766.2|EE027766
EST:     CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
genomic: CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
EST: gi|32843790|gb|CD983471.1|CD983471
EST:     GTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
genomic: GTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
EST: gi|149078548|gb|EE167330.2|EE167330
EST:     CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
genomic: CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
EST: gi|148933068|gb|EE285985.2|EE285985
EST:     CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
genomic: CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
EST: gi|67042393|gb|CO468648.1|CO468648
EST:     CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGGTCAGGCTTGGTAT
genomic: CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTG-TCAAGCTTGGTAT
EST: gi|67020716|gb|CO449465.1|CO449465
EST:     CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTGGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
genomic: CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
EST: gi|148943018|gb|EC888066.2|EC888066
EST:     CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTTGAACTCCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
genomic: CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
EST: gi|148952264|gb|EC898073.2|EC898073
EST:     CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTTGAACTTCCTATGCTTCACCCAGAANAGTTTGTCAAGCTTGGTATT
genomic: CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
EST: gi|32846351|gb|CD986032.1|CD986032
EST:     ACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
genomic: ACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
EST: gi|60401248|gb|DN234055.1|DN234055
EST:     CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
genomic: CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
EST: gi|149077295|gb|EE165971.2|EE165971
EST:     CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTTGAACTTCCTATGC
genomic: CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGC
EST: gi|148968071|gb|EE019406.2|EE019406
EST:     CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
genomic: CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
EST: gi|149040621|gb|EE046862.2|EE046862
EST:     CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAA                         GTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT
genomic: CGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 534

AATTGACCCAAGTGTTACCATGATGACCGTGGAGGAAAAGCCAGATGTGACGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATTGATCCTCCAAAAGGCGTCCTTTGCTATGGCCCACCTGGCACTGGCAAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 542

AATTGACCCAAGTGTTACCATGATGACCGTGGAGGAAAAGCCAGATGTGACGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATTGATCCTCCAAAAGGCGTCCTTTGCTATGGCCCACCTGGCACTGGCAAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 558

AATTGACCCAAGTGTTACCATGATGACCGTGGAGGAAAAGCCAGATGTGACGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATTGATCCTCCAAAAGGCGTCCTTTGCTATGGCCCACCTGGCACTGGCAAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 489

AATTGACCCAAGTGTTACCATGATGACCGTGGAGGAAAAGCCAGATGTGACGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatc ... ttttttgcagGTTGTTGAACTTCCTATGCTTCACCCAGAAAAGTTTGTCAAGCTTGGTATTGATCCTCCAAAAGGCGTCCTTTGCTATGGCCCACCTGGCACTGGCAAGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATTGACCCAAGTGTTACCATGATGACCGTGGAGGAAAAGCCAGATGTGACGTACAATGATGTTGGTGGCTGCAAGGAGCAGATTGAGAAAATGCGTGAAgtatgtgatccttttttcttcttgtgagctggcacatactgcatcatagttagttacgggactagtttggttactctgtgcttgtaccttttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT