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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcag

Basic information

species Zea mays
transcript GRMZM2G181151_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 6
CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatttct-ggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgat-tttgttgcag
||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||| || || || || || |||||||||||||||||||||||||  || ||   |||| |  | ||||| |  ||   |||| || ||||||||||| |              ||||  ||||  |||      | |||  ||||   ||   ||  |  | | | | | |||| ||||  || ||| ||| || |||
CCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGATCTGGAAAACCCATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagtttttgctcaattcaggtgcactgctatggaa-attcatagttaagtgcatgttct--------------tttatcagtacggat-----ggtggc--taaacttatatttctcttctgataatat-taataatgtcttccgatgtttattccag

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 6
CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcag
|| || ||| | || |||||||| ||||| || ||||||||||||||||| ||||| ||||| || || |||||||| || || |||||||| || || ||||   |||||||  |             | |  | || | ||  |    ||| | || |      |      |  |  |                                                                              
CCAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATATTACCCGAGGCTTACTTGGACATATCAGgtataaaatttcttctggggaggtatgaatatgta-tgtttatctt----tgccttttttaatatatcccccataattcag-----------------------------------------------------------------------------

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA18G48280.1 (Glycine max), 5'ss of exon 6
CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatttct--------ggttcaagcacgc-tgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcag
 | || ||| | || |||||||| ||||| || ||||||||||||||||| ||||| ||||| || || || |||||||| || |||||||| || || ||||  ||||||||        |||   |  | || || | | |  |||   |  | || |   |    || |    ||                                                                                         
-CAGTATCATTGGACATGCTTGGCCGCATATTCAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATTTTACCTGAGGCTTACTTGGACATATCAGGtatataatttcttctggggaggtctgaatatgcatgtttttctttgccttt--ttaaatattttccctgtaattcagg----------------------------------------------------------------------------------------

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 7
CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagag-tagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcag
||||||||||| || |||||||| ||||| |||||||||||||||||||| ||||| ||||| || || || |||||||| || ||| ||||||| |||||||  ||| |||   | ||       || ||||||||    ||| ||| |||   ||| |       || ||  ||    |  | |                                                                         
CCTGTCTCACTGGACATGCTTGGACGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaaattcctttgcag------tgttctacaat-tgtatgttgatgtgtgagttttttccccctaatatcttcccaatatttcag----------------------------------------------------------------------

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA10G42940.2 (Glycine max), 5'ss of exon 6
CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagag-tagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcag
||||||||||| || |||||||| ||||| |||||||| ||||||||||| ||||| ||||| || || || |||||||| || ||| ||||||| |||||||  ||| |||   | ||       || ||||||||    ||| ||| |||    || |       || ||  ||    |  | |                                                                         
CCTGTCTCACTAGACATGCTTGGACGCATATTTAATGGCTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaacttcctttgcag------tgttctacaat-tgtatgttgatgtgtgaatttttaccccctaatatcttcccaatatgtcag----------------------------------------------------------------------

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 5'ss of exon 6
CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcag
||||| ||| | || |||||||||||||| ||||| ||||| ||||| || ||||| |||||||| || ||  | || ||||| ||| | ||||| || ||| || || |    |  |||  |  |     |   ||       |  | ||     ||||    |  | |     ||     ||||||| |                                                                   
CCTGTATCATTGGACATGCTTGGGCGCATATTTAACGGTTCAGGAAAGCCGATTGATAATGGCCCTCCTATTCTGCCAGAAGCATACCTTGATATTTCAGgtgagcaactaagaggacaattattccat--tgagatctctgaagcaatgtttcatttgttcttaaaaatgtcaattccttatattgatag-------------------------------------------------------------------

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT4G38510.5 (Arabidopsis thaliana), 5'ss of exon 7
CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcag
||||| ||  | ||||||||||| ||||| || |||||||| || || || |||||||| || || || ||||| ||||| || ||||||||||| |||||| ||    ||  |  ||  |  | |     ||| || |||||  | ||   ||        | | |  |||  ||| |                                                                               
CCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGTTCAGGGAAGCCCATTGACAACGGTCCACCTATATTGCCTGAGGCGTACTTGGATATTTCTGgtgagctgctttagcctcttgt-cacataattactat-ctcataataaaacacacag---atataattctagacttttgtttctccag----------------------------------------------------------------------

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 6
CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcag
||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||  | || || || ||| | ||||| |||||| ||||||    ||   |       |  |   |||     | ||  |||   || || ||     ||   || | || ||  |    ||  ||  |     ||                                                      
CCTGTATCACTGGATATGCTTGGCCGCATTTTTAATGGTTCTGGAAAACCCATTGATAATGGCCCCCCAATTCTGCCAGAGGCTTACCTAGATATTTCTGgtcagtaatgctaggaagataatgatttattaccaaaagctagggaaaag---attttatg----ttatctggatatataataaactcttccttgtctttcatag-----------------------------------------------------

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 6
CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcag
||||||||| | |||||||||||||| || ||||||||||| || ||||| ||||| ||||| || || ||||| || || || ||||||||||| |||||| |||  ||| | |         | |  | |  ||    |||  | ||   ||  |      ||    |||  |||| ||  | ||   |||   | | | |   |   |   ||| | ||| |                                 
CCTGTCTCATTGGATATGCTTGGGCGTATCTTTAATGGTTCAGGGAAACCCATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagt--tttttag----gaggtggtattatttaa---ccat--taaaactcacctct----gaactttagagtttacaa-cagtggcagatc--ctgtact--ctttttctttccttttttcag--------------------------------

upper sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 6
lower sequence: PP1S85_75V6.1 (Physcomitrella patens), 5'ss of exon 6
CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagag--tagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcag
|| |||||  | || ||||| || || ||||| ||||||||||| |||||||||||||| ||||| || ||  |  | ||||| ||  |||| || || ||||      |||   ||     || || | | ||| | ||  |  | |   ||| | | | |  |   | | |   ||| ||||||   || | |||     ||  | || ||  |  ||                                        
CCAGTCTCGTTAGACATGCTGGGACGTATTTTCAATGGTTCTGGCAAACCTATTGACAACGGCCCTCCAATTCTTGCAGAAGCTTATCTGGACATTTCAGgta-----cttcccctt-----acactaccc-acatt-ctactcattagccgcaggctcttggaaccttcggaaaattttgaagtaaatat-gtttaatattat--attcgatctgatcacag-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33102148|gb|CF062108.1|CF062108
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211182799|gb|FL070450.1|FL070450
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAAGTTTCTATTA-TCC-AGTGAGAGAACCTATCCAGAGGAGATGATCCA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAA-GTT-CTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCA
EST: gi|33102006|gb|CF061966.1|CF061966
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32908718|gb|CF013531.1|CF013531
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|33100953|gb|CF060913.1|CF060913
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211182798|gb|FL070449.1|FL070449
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32945519|gb|CF050338.1|CF050338
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|31360502|gb|CD444859.1|CD444859
EST:     ATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: ATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32933270|gb|CF038082.1|CF038082
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|67028686|gb|CO457435.1|CO457435
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32944897|gb|CF049716.1|CF049716
EST:     ATTGACAATGGNNNNNNNGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: ATTGACAATGG-CCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|9953932|gb|BE640515.1|BE640515
EST:     TATTGACAATGGGCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32846162|gb|CD985843.1|CD985843
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32933397|gb|CF038209.1|CF038209
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|33100729|gb|CF060689.1|CF060689
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|31664290|gb|CD573015.1|CD573015
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCA
EST: gi|32942779|gb|CF047598.1|CF047598
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|13389395|gb|BG462701.1|BG462701
EST:     TATTGACAATGGCCCGCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|32931129|gb|CF035941.1|CF035941
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
EST: gi|211466593|gb|FL062044.1|FL062044
EST:     TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTG                         GAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA
genomic: TATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatt ... tttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC