1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGAGAACTGCAACAATGGTTTCGGAAGAAACCGCATCACCTACACAGACACGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAATgtaagctacttacgtattctccggtcctgcttccgttttatacttgttccctgtactgactgaccatatatgttccgcacggcag
species | Zea mays |
transcript | GRMZM2G179737_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAAT GACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGTCAACCACCCAAGTGGAEST: gi|110515503|gb|EE020091.1|EE020091
genomic: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAATgtaagctact ... cgcacggcagGACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGCCAACCACCCAAGTGGA
EST: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAAT GACCTGGTAGTGTCAGGGGTAGCGTCCAGGAGAGCCAACCACCCAAGTGGAEST: gi|93012420|gb|EB637940.1|EB637940
genomic: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAATgtaagctact ... cgcacggcagGACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGCCAACCACCCAAGTGGA
EST: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAAT GACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGCCAACCACCCAAGTGGAEST: gi|91054011|gb|EB164429.1|EB164429
genomic: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAATgtaagctact ... cgcacggcagGACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGCCAACCACCCAAGTGGA
EST: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAAT GACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGCCAACCACCCAAGTGGAEST: gi|19351534|gb|BM896066.1|BM896066
genomic: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAATgtaagctact ... cgcacggcagGACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGCCAACCACCCAAGTGGA
EST: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAAT GACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGTCAACCACCCAAGTGGAEST: gi|149014431|gb|EE044038.2|EE044038
genomic: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAATgtaagctact ... cgcacggcagGACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGCCAACCACCCAAGTGGA
EST: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAAT GACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGCCAACCACCCAAGTGGAEST: gi|20507208|gb|BQ279531.1|BQ279531
genomic: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAATgtaagctact ... cgcacggcagGACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGCCAACCACCCAAGTGGA
EST: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAAT GACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGTCAACCACCCAAGTGGAEST: gi|71432608|gb|DR813658.1|DR813658
genomic: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAATgtaagctact ... cgcacggcagGACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGCCAACCACCCAAGTGGA
EST: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAAT GACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGCCAACCACCCAAGTGGAEST: gi|19350892|gb|BM895424.1|BM895424
genomic: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAATgtaagctact ... cgcacggcagGACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGCCAACCACCCAAGTGGA
EST: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAAT GACCTGGTAGTGCCAGGGGTAGCGTCAAGGAGAGTCAACCACCCAAGTGGAEST: gi|149110590|gb|EE294202.2|EE294202
genomic: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAATgtaagctact ... cgcacggcagGACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGCCAACCACCCAAGTGGA
EST: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAAT GACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGCCAACCACCCAAGTGGAEST: gi|4610088|gb|AI600927.1|AI600927
genomic: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAATgtaagctact ... cgcacggcagGACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGCCAACCACCCAAGTGGA
EST: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAAT GACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGCCAACCACCCAAGTGGA
genomic: CGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAATgtaagctact ... cgcacggcagGACCTGGTAGTGTCAGGGGTAGCGTCAAGGAGAGCCAACCACCCAAGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGAACTGCAACAATGGTTTCGGAAGAAACCGCATCACCTACACAGACACGTGTACCGGTCAAGATCTGAAGAAATACCACAACATGGATGCCATCAATgtaagctacttacgtattctccggtcctgcttccgttttatacttgttccctgtactgactgaccatatatgttccgcacggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA