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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGGTATgtgacttttgtttagatttggcttcccttcaattggttaaccgtgaataagcccgctaacctgatgattcctagctacatatcctggcggcagtgagaaactgtctgccgccaaagccctcaacagttttttttagttttgctaagcctttttttttgcatgtaacaacagatag

Basic information

species Zea mays
transcript GRMZM2G179429_T03
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88754687|gb|DY538828.1|DY538828
EST:     GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGATAG                         GTTATCTGGGGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
genomic: GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGGTATgtgacttttg ... caacagatagGTTATCTGGGGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
EST: gi|31364129|gb|CD448484.1|CD448484
EST:     GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGATAG                         GTTATCTGGTGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
genomic: GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGGTATgtgacttttg ... caacagatagGTTATCTGGGGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
EST: gi|60357983|gb|DN224956.1|DN224956
EST:     GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGATAG                         GTTATCTGGGGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
genomic: GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGGTATgtgacttttg ... caacagatagGTTATCTGGGGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
EST: gi|76014912|gb|DT942082.1|DT942082
EST:     GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGATAG                         GTTATCTGGGGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
genomic: GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGGTATgtgacttttg ... caacagatagGTTATCTGGGGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
EST: gi|32165071|gb|CD670389.1|CD670389
EST:     GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGATAG                         GTTATCTGGGGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
genomic: GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGGTATgtgacttttg ... caacagatagGTTATCTGGGGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
EST: gi|91048409|gb|EB158827.1|EB158827
EST:     GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGATAG                         GTTATCTGGGGGTGATGGATGACCG
genomic: GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGGTATgtgacttttg ... caacagatagGTTATCTGGGG-TGATGGATGACCG
EST: gi|31364620|gb|CD448975.1|CD448975
EST:     GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGATAG                         GTTATCTGGTGTGATGGATGACCGTGGGAAGTTCATCTACATC
genomic: GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGGTATgtgacttttg ... caacagatagGTTATCTGGGGTGATGGATGACCGTGGGAAGTTCATCTACATC
EST: gi|211469382|gb|FL187167.1|FL187167
EST:     GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGATAG                         GTTATCTGGTGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
genomic: GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGGTATgtgacttttg ... caacagatagGTTATCTGGGGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
EST: gi|78112541|gb|DV530935.1|DV530935
EST:     GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGATAG                         GTTATCTGGGGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
genomic: GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGGTATgtgacttttg ... caacagatagGTTATCTGGGGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
EST: gi|211427421|gb|FL445183.1|FL445183
EST:     GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGATAG                         GTTATCTGGTGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
genomic: GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGGTATgtgacttttg ... caacagatagGTTATCTGGGGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
EST: gi|148932548|gb|EC876363.2|EC876363
EST:     GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGATAG                         GTTATCTGGTGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
genomic: GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGGTATgtgacttttg ... caacagatagGTTATCTGGGGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
EST: gi|71773570|gb|DR971468.1|DR971468
EST:     GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGATAG                         GTTATCTGGGGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
genomic: GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGGTATgtgacttttg ... caacagatagGTTATCTGGGGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
EST: gi|94472565|gb|EB701523.1|EB701523
EST:     GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGATAG                         GTTATCTGGGGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
genomic: GACTGTATCAATCGGATTGTTACTCTGGAAAGCATGGGTATgtgacttttg ... caacagatagGTTATCTGGGGTGATGGATGACCGTGGGAAGTTCATCTACATCTCCACTGA
EST: gi|148958245|gb|EC904458.2|EC904458
EST:     GACTGTATNCA-TCGGATTGTTACTCTGGAAAGCATGGATAG                         GTTATCTGGGGTGATGGATGACCGTGG
genomic: GACTGTAT-CAATCGGATTGTTACTCTGGAAAGCATGGGTATgtgacttttg ... caacagatagGTTATCTGGGGTGATGGATGACCGTGG