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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCTCTGCCTAAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaatttttaactttctctcccacttaggctcagtttacgtggttctatttcatacatccaaattgatttccatatataatttgaaaatacacag

Basic information

species Zea mays
transcript GRMZM2G179097_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179097_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os04g41100.6 (Oryza sativa), 5'ss of exon 7
CAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCTCTGCCTAAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt--aactttctctcccactta-ggctcagtttacgtggttctatttcatacatccaaattgatttccatatataatttgaaaatacacag
||||||| | |||| |  ||||  | ||||||  |||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| | ||||||||  | ||   |||  | |   | ||||   |    | |||  |   | | ||||||  |   ||||| |||| | || |  |||  | |        
CAGCAGATGCTGCTTTGCAGCATGAGTGGTTCCGTGAAGTTCCTCTACCTAAATCAAAGGATTTCATGCCAACATTCCCTGCTCTAAATGAATTAGACAGgtacttcttcgcaaccatttaatctacttgtagtgttgcttaaatatctttgtttcatgtagtgaaatttattttcctaaa--attccacag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78544467|gb|DV621965.1|DV621965
EST:     AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|24768734|gb|CA403863.1|CA403863
EST:     TCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: TCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|44681705|gb|CK786753.1|CK786753
EST:     AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|32847543|gb|CD987224.1|CD987224
EST:     AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAAGTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|32832598|gb|CD972276.1|CD972276
EST:     AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAAGTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|60349412|gb|DN216385.1|DN216385
EST:     AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|32930695|gb|CF035507.1|CF035507
EST:     AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAAGTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|60400885|gb|DN233692.1|DN233692
EST:     GCCAACATTCCCTGCTCTTAATGAACTGGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: GCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|60352819|gb|DN219792.1|DN219792
EST:     AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|5922115|gb|AW055509.1|AW055509
EST:     CATGCCAACATTCCCTGCTCTTAATGAACTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: CATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|4646970|gb|AI622045.1|AI622045
EST:     AAAGAACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|60394713|gb|DN227583.1|DN227583
EST:     AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|60345354|gb|DN212327.1|DN212327
EST:     AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|60354973|gb|DN221946.1|DN221946
EST:     AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|60340465|gb|DN207438.1|DN207438
EST:     AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|211298659|gb|FL153830.1|FL153830
EST:     AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAAGTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|5762227|gb|AI967275.1|AI967275
EST:     TTCCCTGCTCTTAATGAACTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: TTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT