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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCTCTGCCTAAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaatttttaactttctctcccacttaggctcagtttacgtggttctatttcatacatccaaattgatttccatatataatttgaaaatacacag

Basic information

species Zea mays
transcript GRMZM2G179097_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179097_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os04g41100.6 (Oryza sativa), 5'ss of exon 7
CAGCAGACGATGCTCTTAAGCACAAATGGTTCTCTGAAGTTCCTCTGCCTAAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt--aactttctctcccactta-ggctcagtttacgtggttctatttcatacatccaaattgatttccatatataatttgaaaatacacag
||||||| | |||| |  ||||  | ||||||  |||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| | ||||||||  | ||   |||  | |   | ||||   |    | |||  |   | | ||||||  |   ||||| |||| | || |  |||  | |        
CAGCAGATGCTGCTTTGCAGCATGAGTGGTTCCGTGAAGTTCCTCTACCTAAATCAAAGGATTTCATGCCAACATTCCCTGCTCTAAATGAATTAGACAGgtacttcttcgcaaccatttaatctacttgtagtgttgcttaaatatctttgtttcatgtagtgaaatttattttcctaaa--attccacag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18175293|gb|BM350660.1|BM350660
EST:     AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|18163384|gb|BM333223.1|BM333223
EST:     AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|32847543|gb|CD987224.1|CD987224
EST:     AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAAGTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|32930695|gb|CF035507.1|CF035507
EST:     AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAAGTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|18170161|gb|BM340001.1|BM340001
EST:     TCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: TCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|4646970|gb|AI622045.1|AI622045
EST:     AAAGAACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|18172736|gb|BM348124.1|BM348124
EST:     AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
EST: gi|60398387|gb|DN231203.1|DN231203
EST:     AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAG                         GCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT
genomic: AAATCAAAGGACTTCATGCCAACATTCCCTGCTCTTAATGAACTTGACAGgtaaattttt ... aaatacacagGCGTTCCAGAAGGTATCTGAAGAGTCCTGATCCTCTGGAAGAGCAACGTTT