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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATGAGTCTACGTGAAGTAAAGgtattttagaccagtggtgttctttttatcattctctgttttgttctttcagctgatatttcttttattgttattttattgaag

Basic information

species Zea mays
transcript GRMZM2G178822_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178822_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g47220.3 (Oryza sativa), 5'ss of exon 1
-------------------------------GTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATGAGTCTACGTGAAGTAAAGgtattttagaccagtggtgttctttttatcattctctgttttgttctttcagctgatatttcttttattgttattttattgaag
                               || || ||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||    |  | ||| |  | | ||     ||| | ||  | |||| |||||||||||  |||         |||||||
GATTGTAAGCAAAATGTGCACTGATCTATAGGTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAGgtattttaactgaaagatgtaccctctttc-----ctgctatgaaccttcaactgatatttctcctat---------attgaag

upper sequence: GRMZM2G178822_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g47220.1 (Oryza sativa), 5'ss of exon 6
GTTGCTGTTAAGAAAATGAAGAAAAAATATTATTCTTTTGAGGAATGTATGAGTCTACGTGAAGTAAAGgtattttagaccagtggtgttctttttatcattctctgttttgttctttcagctgatatttcttttattgttattttattgaag
|| || ||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||    |  | ||| |  | | ||     ||| | ||  | |||| |||||||||||  |||         |||||||
GTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAGgtattttaactgaaagatgtaccctctttc-----ctgctatgaaccttcaactgatatttctcctat---------attgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211443458|gb|FL042456.1|FL042456
EST:     AGAAAAAATATTATTCTTTTGAGGAATGTATGAGTCTACGTGAAGTAAAG                         TCTTTGCGGCGCATGAATCATCCTAACATTGTGAAGCTCAAAGAGGTTATC
genomic: AGAAAAAATATTATTCTTTTGAGGAATGTATGAGTCTACGTGAAGTAAAGgtattttaga ... tttattgaagTCTTTGCGGCGCATGAATCATCCTAACATTGTGAAGCTCAAAGAGGTTATC
EST: gi|211443465|gb|FL042463.1|FL042463
EST:     AGAAAAAATATTATTCTTTTGAGGAATGTATGAGTCTACGTGAAGTAAAG                         TCTTTGCGGCGCATGAATCATCCTAACATTGTGAAGCTCAAAGAGGTTATC
genomic: AGAAAAAATATTATTCTTTTGAGGAATGTATGAGTCTACGTGAAGTAAAGgtattttaga ... tttattgaagTCTTTGCGGCGCATGAATCATCCTAACATTGTGAAGCTCAAAGAGGTTATC
EST: gi|60345317|gb|DN212290.1|DN212290
EST:     AGAAAAAATATTATTCTTTTGAGGAATGTATGAGTCTACGTGAAGTAAAG                         TCTTTGCGGCGCATGAATCATCCTAACATTGTGAAGCTCAAAGAGGTTATC
genomic: AGAAAAAATATTATTCTTTTGAGGAATGTATGAGTCTACGTGAAGTAAAGgtattttaga ... tttattgaagTCTTTGCGGCGCATGAATCATCCTAACATTGTGAAGCTCAAAGAGGTTATC
EST: gi|211443464|gb|FL042462.1|FL042462
EST:     AGAAAAAATATTATTCTTTTGAGGAATGTATGAGTCTACGTGAAGTAAAG                         NCTTTGCGGCGCATGAATCATCCTAACATTGTGAAGCTCAAAGAGGTTATC
genomic: AGAAAAAATATTATTCTTTTGAGGAATGTATGAGTCTACGTGAAGTAAAGgtattttaga ... tttattgaagTCTTTGCGGCGCATGAATCATCCTAACATTGTGAAGCTCAAAGAGGTTATC
EST: gi|211443461|gb|FL042459.1|FL042459
EST:     AGAAAAAATATTATTCTTTTGAGGAATGTATGAGTCTACGTGAAGTAAAG                         TCTTTGCGGCGCATGAATCATCCTAACATTGTGAAGCTCAAAGAGGTTATC
genomic: AGAAAAAATATTATTCTTTTGAGGAATGTATGAGTCTACGTGAAGTAAAGgtattttaga ... tttattgaagTCTTTGCGGCGCATGAATCATCCTAACATTGTGAAGCTCAAAGAGGTTATC
EST: gi|211441339|gb|FL042453.1|FL042453
EST:     AGAAAAAATATTATTCTTTTGAGGAATGTATGAGTCTACGTGAAGTAAAG                         TCTTTGCGGCGCATGAATCATCCTAACATTGTGAAGCTCAAAGAGGGTATC
genomic: AGAAAAAATATTATTCTTTTGAGGAATGTATGAGTCTACGTGAAGTAAAGgtattttaga ... tttattgaagTCTTTGCGGCGCATGAATCATCCTAACATTGTGAAGCTCAAAGAGGTTATC
EST: gi|166575936|gb|EG274034.1|EG274034
EST:     AG-AAAAATATTATTCTTTTGAGGAATGTATGAGTCTACGTGAAGTAAAG                         TCTTTGCGGCGCA
genomic: AGAAAAAATATTATTCTTTTGAGGAATGTATGAGTCTACGTGAAGTAAAGgtattttaga ... tttattgaagTCTTTGCGGCGCA
EST: gi|211443463|gb|FL042461.1|FL042461
EST:     GAAAAAATATTATTCTTTTGAGGAATGTATGAGNCTACCGNGAAGTAAAG                         TCTTTGCGGCGCATGAATCATCCTAACATTG
genomic: GAAAAAATATTATTCTTTTGAGGAATGTATGAGTCTAC-GTGAAGTAAAGgtattttaga ... tttattgaagTCTTTGCGGCGCATGAATCATCCTAACATTG