1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGGAAGAGACGCCGCTACTGGAAGGGGAGTTCTGTTTGCTACTGAAGCTTTGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtgtgtaggttaggccttattacttttaaaagatccacatccgagaagctttcagaccccgtcgattgcatgatatgcgccttccggctccga...
species | Zea mays |
transcript | GRMZM2G178415_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG GGATTCGGTAACGTTGGGTCCTGGGCAGCTCAGCTGATAAGTGAAAGC-GGEST: gi|148934217|gb|EC878238.2|EC878238
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAA-GCCGG
EST: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGTEST: gi|149082772|gb|EE171995.2|EE171995
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGTEST: gi|60354014|gb|DN220987.1|DN220987
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: TGCTTGCAGAGCACGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGTEST: gi|87152935|gb|DY397724.1|DY397724
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG GGATTCGGTAACGTTGGTTCEST: gi|19436213|gb|BM952623.1|BM952623
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTC
EST: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGTEST: gi|148940231|gb|EC885000.2|EC885000
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGTEST: gi|211300259|gb|FL012334.1|FL012334
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGTEST: gi|78092010|gb|DV520384.1|DV520384
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGTEST: gi|13125987|gb|BG316662.1|BG316662
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGTEST: gi|78089717|gb|DV518091.1|DV518091
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGTEST: gi|91867926|gb|EB399854.1|EB399854
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGTEST: gi|149101283|gb|EE187396.2|EE187396
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGTEST: gi|87156586|gb|DY401375.1|DY401375
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGTEST: gi|149110227|gb|EE190296.2|EE190296
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGTEST: gi|19351121|gb|BM895653.1|BM895653
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGTEST: gi|26559718|gb|CA831953.1|CA831953
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGTEST: gi|60357158|gb|DN224131.1|DN224131
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
EST: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAG GGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
genomic: TGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtg ... ccctttgcagGGATTCGGTAACGTTGGTTCCTGGGCAGCTCAGCTGATAAGTGAAGCCGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAAGAGACGCCGCTACTGGAAGGGGAGTTCTGTTTGCTACTGAAGCTTTGCTTGCAGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTCGTCATACAGgtagatggtgtgtaggttaggccttattacttttaaaagatccacatccgagaagctttcagaccccgtcgattgcatgatatgcgccttccggctccga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG