Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGGACAGTACGCACGCCACCGCCTCTGCCTCCTCCCCCCGGTCCTACGAGCTCCACGGCGATGGCGGCGGCGGCGGCGCCAGCATCTCTTTCCCGCAGgtctgccttctgtttccttgccctctaccactgtagcacatggtcgtcgtccagggttcagctccagaatatcgactgtatcgtgatcgtgattagtctgcacgatatatatctccag

Basic information

species Zea mays
transcript GRMZM2G178182_T02
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76280840|gb|DV020408.1|DV020408
EST:     AGCTCCACGGCGATGGCGGCGGCGGCGGCGCCAGCATCTCTTTCCCGCAG                         GACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG
genomic: AGCTCCACGGCGATGGCGGCGGCGGCGGCGCCAGCATCTCTTTCCCGCAGgtctgccttc ... atatctccagGACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG
EST: gi|91874701|gb|EB404658.1|EB404658
EST:     AGCTCCACGGCGATGGCGGGGGCGGCGGCGCCAGCATCTCTTTCCCGCAG                         GACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG
genomic: AGCTCCACGGCGATGGCGGCGGCGGCGGCGCCAGCATCTCTTTCCCGCAGgtctgccttc ... atatctccagGACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG
EST: gi|78113319|gb|DV531711.1|DV531711
EST:     AGCTCCACGGCGATGGCGGCGGCGGCGGCGCCAGCATCTCTTTCCCGCAG                         GACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG
genomic: AGCTCCACGGCGATGGCGGCGGCGGCGGCGCCAGCATCTCTTTCCCGCAGgtctgccttc ... atatctccagGACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG
EST: gi|60340466|gb|DN207439.1|DN207439
EST:     AGCTCCACGGCGATGGCGGCGGCGGCGGCGCCAGCATCTCTTTCCCGCAG                         GACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG
genomic: AGCTCCACGGCGATGGCGGCGGCGGCGGCGCCAGCATCTCTTTCCCGCAGgtctgccttc ... atatctccagGACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG
EST: gi|71756803|gb|DR954740.1|DR954740
EST:     AGCTCCACGGCGATGGCGGCGGCGGCGGCGCCAGCATCTCTTTCCCGCAG                         GACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG
genomic: AGCTCCACGGCGATGGCGGCGGCGGCGGCGCCAGCATCTCTTTCCCGCAGgtctgccttc ... atatctccagGACGGCGGCGGCTACATGGCGCAAACAGTAGGTGGGCCAAGGCCAGAGCTG