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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGATTGTGCAGgtatgcttcatatgttcatatctcatgatgtttcaccccccaacccacccctcccccctttttaatttttgttgctcttactctaaaggaaaatttgcag

Basic information

species Zea mays
transcript GRMZM2G178169_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178169_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os08g33830.1 (Oryza sativa), 5'ss of exon 6
GGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGATTGTGCAGgtatgcttcatatgttcatatctcatgatgtttcaccccccaacccacccctcccccctttttaatttttgttgctcttactctaaaggaaaatttgcag
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GGATTACACGAATCCATATCTTCCTGTGAATCCAACAGCAATCGAGGGAATCGCACAGgtatgctttaacatttcatactattcgttgtgttctttctc------tccttccttacagtggaggttatgcag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101382157|gb|EB813134.1|EB813134
EST:     CCAATCCTTACCTTCCTGTGAACCAA-CAGCAATTGAAGGGATTGTGCAG                         CCCACTGTAGGCCCTGATGGGAAAATAAAGGAGCCTGAAAGCAATGTACTT
genomic: CCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGATTGTGCAGgtatgcttca ... aaatttgcagCCCACTGTAGGCCCTGATGGGAAGATAAAGGAGCCTGAGAGCAATGTACTT
EST: gi|6626417|gb|AW257949.1|AW257949
EST:     CCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGATTGTGCAG                         CCTACTGTAGGCCCTGATGGGAAGATAAAGGAGCCTGAGAGCAATGTACTT
genomic: CCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGATTGTGCAGgtatgcttca ... aaatttgcagCCCACTGTAGGCCCTGATGGGAAGATAAAGGAGCCTGAGAGCAATGTACTT