1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAGgtattgccatacttttatcactagtttttttagcgaaagggcctttagctgagttggttacgtggtctgagtagcactccttaggtcctgagttcgaatc...
species | Zea mays |
transcript | GRMZM2G177912_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAG CTTAGCAGTTCGTGAEST: gi|9953349|gb|BE639932.1|BE639932
genomic: AACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAGgtattgccat ... tctgtgacagCTTAGCAGTTCGTGA
EST: AACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAG CTTAGCAGTTCGTGATCTTTCCAATCTGGTAAAACCEST: gi|78120131|gb|DV538515.1|DV538515
genomic: AACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAGgtattgccat ... tctgtgacagCTTAGCAGTTCGTGATCTTTCCAATCTGGTAAAACC
EST: AACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAG CTTAGCAGTTCGTGATCTTTCCAATCTGGTAAAACCAGAGGATATGGTCTGEST: gi|211267792|gb|FL344631.1|FL344631
genomic: AACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAGgtattgccat ... tctgtgacagCTTAGCAGTTCGTGATCTTTCCAATCTGGTAAAACCAGAGGATATGGTCTG
EST: AACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAG CTTAGCAGTTCGTGACCTTTCCAATEST: gi|67016433|gb|CO445182.1|CO445182
genomic: AACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAGgtattgccat ... tctgtgacagCTTAGCAGTTCGTGATCTTTCCAAT
EST: AACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAG CTTAGCAGTTCGTGACCTTTCCAATCTGGTAAAACCAGAGGATATGGTCTGEST: gi|67042528|gb|CO468783.1|CO468783
genomic: AACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAGgtattgccat ... tctgtgacagCTTAGCAGTTCGTGATCTTTCCAATCTGGTAAAACCAGAGGATATGGTCTG
EST: AACAACGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAG CTTAGCAGTTCGTGATCTTTCCAATCTGGTAAAACCAGAGGATATGGTCTGEST: gi|149104624|gb|EE290073.2|EE290073
genomic: AACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAGgtattgccat ... tctgtgacagCTTAGCAGTTCGTGATCTTTCCAATCTGGTAAAACCAGAGGATATGGTCTG
EST: AACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAG CTTAGCAGTTCGTGATCTTTCCAATCTGGTAAAACCAGAGGATATGGTCTGEST: gi|148969238|gb|EE019992.2|EE019992
genomic: AACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAGgtattgccat ... tctgtgacagCTTAGCAGTTCGTGATCTTTCCAATCTGGTAAAACCAGAGGATATGGTCTG
EST: AACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAG CTTAGCAGTTCGTGATCTTTCCAATCTGGTAAAACCAGAGGATATGGTCTGEST: gi|211460898|gb|FL364621.1|FL364621
genomic: AACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAGgtattgccat ... tctgtgacagCTTAGCAGTTCGTGATCTTTCCAATCTGGTAAAACCAGAGGATATGGTCTG
EST: AACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAG CTTAGCAGTTCGTGACCTTTCCAATCEST: gi|76288290|gb|DV027858.1|DV027858
genomic: AACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAGgtattgccat ... tctgtgacagCTTAGCAGTTCGTGATCTTTCCAATC
EST: AACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAG CTTAGCAGTTCGTGATCTTTCCAATCTGGTAAAACCAGAGGATATGGTCTG
genomic: AACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAGgtattgccat ... tctgtgacagCTTAGCAGTTCGTGATCTTTCCAATCTGGTAAAACCAGAGGATATGGTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCGAGCAGCGGAATATAACAATGTAAGGAGCCAGCTTACTGCAATCAACAGAAAGCAAAGTGGGAGgtattgccatacttttatcactagtttttttagcgaaagggcctttagctgagttggttacgtggtctgagtagcactccttaggtcctgagttcgaatc
- - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG