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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTCAAGAACTTCTCGAAATCTGCCAGAGAATTAATCACACGATTACAGAAGATCGACAGTGATAACTACCCAGAGgttagtgatgctaagaagagtcctgggtgacaatttttgttccagcattttgaaaaatactcaaagaatatttttattagtaatttgactaaaattcaaaagatgaaatatacttccttcttggcactatgtttatcttgacccaactttactacccctaatgcattttggatgctattacag

Basic information

species Zea mays
transcript GRMZM2G174990_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174990_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g46720.1 (Oryza sativa), 5'ss of exon 6
GGTTTCAAGAACTTCTCGAAATCTGCCAGAGAATTAATCACACGATTACAGAAGATCGACAGTGATAACTACCCAGAGgttagtgatgctaagaagagtcctgggtgacaatttttgttccagcattttgaaaaatactcaaagaatatttttattagtaatttgactaaaat-tcaaaagatgaaatatacttccttcttggcactatgtttatcttgacccaactttactacccctaatgcattttggatgctattacag
||||| ||||||||||| ||| |||| || ||  ||||||||||| | ||||||||||||| ||| ||||||||||||||  ||||| |    | |   | |   |  |||     ||    ||||  || |      |       | |    |  | | | ||| ||||    ||   | |      | |                                                                       
GGTTTAAAGAACTTCTCAAAAGCTGCAAGGGATCTAATCACACGACTGCAGAAGATCGACAATGACAACTACCCAGAGgtaggtgattcccccatgtaccttattttccaaa----gtagtggcatagtgcatgccttttgcttgttgtcccaac-actgaattgcctaatgcatcctgaaacctctcacag----------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31353713|gb|CD438070.1|CD438070
EST:     GAGAATTAATCACACGATTACAGAAGATCGACAGTGATAACTACCCAGAG                         ACACTGTGCCGGATGTATATAATTAATGCTGGCCAAGGCTTCAAGATGTTA
genomic: GAGAATTAATCACACGATTACAGAAGATCGACAGTGATAACTACCCAGAGgttagtgatg ... gctattacagACACTGTGCCGGATGTATATAATTAATGCTGGCCAAGGCTTCAAGATGTTA
EST: gi|60351666|gb|DN218639.1|DN218639
EST:     GAGAATTAATCACACGATTACAGAAGATCGACAGTGATAACTACCCAGAG                         ACACTGTGCCGGATGTATATAATTAATGCTGGCCAAGGCTTCAAGATGTTA
genomic: GAGAATTAATCACACGATTACAGAAGATCGACAGTGATAACTACCCAGAGgttagtgatg ... gctattacagACACTGTGCCGGATGTATATAATTAATGCTGGCCAAGGCTTCAAGATGTTA