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GAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGCCCATCACCAAACGGATGTTCGATGAAGTTGCCAGCCTGCAAAGGTCATTGCCTGgtatagctcttgtaaatcactgctgtctagtggttctcaaaacctaagttactgatatgatcattctttcagtaacaaaatttactgctacacctttttc...
species | Zea mays |
transcript | GRMZM2G174830_T04 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CACCAAACGGATGTTCGATGAAGTTGCCAGCCTGCAAAGGTCATTGCCTG GTTCCTTGGGGAAATAGTGTCATCCTTGTCGGAGGTAAAACTGAGCCTGCTEST: gi|78114801|gb|DV533189.1|DV533189
genomic: CACCAAACGGATGTTCGATGAAGTTGCCAGCCTGCAAAGGTCATTGCCTGgtatagctct ... tgatgtacagGTTCCTTGGGGAAATAGTGTCATCCTTGTCGGAGGTAAAACTGAGCCTGCT
EST: CACCAAACGGATGTTCGATGAAGTTGCCAGCCTGCAAAGGTCATTGCCTG GTTCCTTGGGGAAATAGTGTCATCCTTTGTCG-AGG-AAAACTGAGCCTGCEST: gi|74242321|gb|DT650235.1|DT650235
genomic: CACCAAACGGATGTTCGATGAAGTTGCCAGCCTGCAAAGGTCATTGCCTGgtatagctct ... tgatgtacagGTTCCTTGGGGAAATAGTGTCATCCTT-GTCGGAGGTAAAACTGAGCCTGC
EST: CACCAAACGGATGTTCGATGAAGTTGCCAGCCTGCAAAGGTCATTGCCTG GTTCCTTGGGGAAATAGTGTCA
genomic: CACCAAACGGATGTTCGATGAAGTTGCCAGCCTGCAAAGGTCATTGCCTGgtatagctct ... tgatgtacagGTTCCTTGGGGAAATAGTGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATCTAGAGAAGCTTACTTGGGATTCTGCGCCTCCTAAAGTTTGCCCATCACCAAACGGATGTTCGATGAAGTTGCCAGCCTGCAAAGGTCATTGCCTGgtatagctcttgtaaatcactgctgtctagtggttctcaaaacctaagttactgatatgatcattctttcagtaacaaaatttactgctacacctttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaaat