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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGTGACTATCGAGCACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacacttcagcaatgcattttactttctaacttccatcttaatgttaatgagttgttgtagaaagatgggaaaatgactcatttggtggtttaatgc...

Basic information

species Zea mays
transcript GRMZM2G174696_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174696_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g20750.1 (Oryza sativa), 5'ss of exon 6
GGAAGTGACTATCGAGCACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacactt-------cagcaatgcattttactttctaa--cttccatcttaatgttaatgagttgttgtagaaagatgggaaaatgactcatttggtggtttaatgc
|| |  ||||| ||||| ||||| |||||||| || ||||| |||||||| ||||||||||||||||||| ||| |       |||   |||||||  ||||  ||  ||  |||  | || || | || ||   ||| |  ||   |||||    | || ||            
GGGACAGACTACCGAGCTCAATTTCAAATTGGAAATAATGCGTTCTATGGGGCAAATTATATTCAGgtaagcacctttacttgcagacgtgcatttatctttaaaagcctcacattgtcatcttcaggactttaggtaaactgaaaagaaaaatgatgatatgtaa---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31353843|gb|CD438200.1|CD438200
EST:     CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAG                         A
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacactt ... cttttcagag-
EST: gi|31353843|gb|CD438200.1|CD438200
EST:     CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAG                         A
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacactt ... cttttcagag-
EST: gi|31353843|gb|CD438200.1|CD438200
EST:     CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAG                         A
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacactt ... cttttcagag-
EST: gi|37398312|gb|CF636468.1|CF636468
EST:     TATGGTGCAAATTATATTCAGAG                        
genomic: TATGGTGCAAATTATATTC--AGgtaaacactt ... cttttcaga
EST: gi|148944949|gb|EC890114.2|EC890114
EST:     CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAG                         A
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacactt ... cttttcagag-
EST: gi|148944949|gb|EC890114.2|EC890114
EST:     CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAG                         A
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacactt ... cttttcagag-
EST: gi|148944949|gb|EC890114.2|EC890114
EST:     CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAG                         A
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacactt ... cttttcagag-
EST: gi|71428447|gb|DR809497.1|DR809497
EST:     CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAG                         A
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacactt ... cttttcagag-
EST: gi|71428447|gb|DR809497.1|DR809497
EST:     CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAG                         A
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacactt ... cttttcagag-
EST: gi|71428447|gb|DR809497.1|DR809497
EST:     CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAG                         A
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacactt ... cttttcagag-
EST: gi|76294141|gb|DV033709.1|DV033709
EST:     CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAG                         A
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacactt ... cttttcagag-
EST: gi|76294141|gb|DV033709.1|DV033709
EST:     CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAG                         A
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacactt ... cttttcagag-
EST: gi|76294141|gb|DV033709.1|DV033709
EST:     CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAG                         A
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacactt ... cttttcagag-
EST: gi|148937183|gb|EC881364.2|EC881364
EST:     CACAATTCCAAATTGAGAACAATGCATTCTATGGTGCAAATTATATTCAG                         A
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacactt ... cttttcagag-
EST: gi|148937183|gb|EC881364.2|EC881364
EST:     CACAATTCCAAATTGAGAACAATGCATTCTATGGTGCAAATTATATTCAG                         A
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacactt ... cttttcagag-
EST: gi|148937183|gb|EC881364.2|EC881364
EST:     CACAATTCCAAATTGAGAACAATGCATTCTATGGTGCAAATTATATTCAG                         A
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacactt ... cttttcagag-
EST: gi|6095402|gb|AW120069.1|AW120069
EST:     CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGAG                        
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTC--AGgtaaacactt ... cttttcaga
EST: gi|6095403|gb|AW120070.1|AW120070
EST:     CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGAG                        
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTC--AGgtaaacactt ... cttttcaga
EST: gi|89762284|gb|DY689955.1|DY689955
EST:     CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAG                         A
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacactt ... cttttcagag-
EST: gi|89762284|gb|DY689955.1|DY689955
EST:     CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAG                         A
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacactt ... cttttcagag-
EST: gi|89762284|gb|DY689955.1|DY689955
EST:     CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAG                         A
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGgtaaacactt ... cttttcagag-
EST: gi|6095404|gb|AW120071.1|AW120071
EST:     CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGAG                        
genomic: CACAATTCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTC--AGgtaaacactt ... cttttcaga