1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCGGTTGATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAGgtatgtgtgctgttgtggaatgaaatctgatgaatggaactgcatattcactctatgcatgcccaaatgatgggctctgattcatgtgtgcctgcacttgtag
species | Zea mays |
transcript | GRMZM2G173682_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAG TGTTGTCCGAGATTTGGCTCTAGAACAAATAGACCCATCCCTAGCCATTGGEST: gi|148949197|gb|EC894635.2|EC894635
genomic: GATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAGgtatgtgtgc ... gcacttgtagTGTTGTCCGAGATTTGGCTCTAGAACAAATAGACCCATCCCTAGCCATTGG
EST: GATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAG TGTTGTCCGAGATTTGGCTCTAGAACAAATAGACCCATCCCTAGCCATTGGEST: gi|211435917|gb|FL467684.1|FL467684
genomic: GATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAGgtatgtgtgc ... gcacttgtagTGTTGTCCGAGATTTGGCTCTAGAACAAATAGACCCATCCCTAGCCATTGG
EST: GATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAG TGTTGTCCGAGATTTGGCTCTAGAACAAATAGACCCATCCCTAGCCATTGGEST: gi|87157629|gb|DY402418.1|DY402418
genomic: GATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAGgtatgtgtgc ... gcacttgtagTGTTGTCCGAGATTTGGCTCTAGAACAAATAGACCCATCCCTAGCCATTGG
EST: GATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAG TGTTGTCCGAGATTTGGCTCTAGAACAAATAGACCCATCCCTAGCCATTGGEST: gi|84969916|gb|DV170881.2|DV170881
genomic: GATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAGgtatgtgtgc ... gcacttgtagTGTTGTCCGAGATTTGGCTCTAGAACAAATAGACCCATCCCTAGCCATTGG
EST: GATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAG TGTTGTCCGAGATTTGGCTCTAGAACAAATAGACCCATCCCTAGCCATTGGEST: gi|22715457|gb|BU197774.1|BU197774
genomic: GATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAGgtatgtgtgc ... gcacttgtagTGTTGTCCGAGATTTGGCTCTAGAACAAATAGACCCATCCCTAGCCATTGG
EST: ATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAG -GTTGTCCGAGATTTGGCTCTAGAACAAATAGACCCATCCCTAGCCATTGGEST: gi|211435918|gb|FL467685.1|FL467685
genomic: ATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAGgtatgtgtgc ... gcacttgtagTGTTGTCCGAGATTTGGCTCTAGAACAAATAGACCCATCCCTAGCCATTGG
EST: GATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAG TGTTGTCCGAGATTTGGCTCTAGAACAAATAGACCCATCCCTAGCCATTGG
genomic: GATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAGgtatgtgtgc ... gcacttgtagTGTTGTCCGAGATTTGGCTCTAGAACAAATAGACCCATCCCTAGCCATTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGTTGATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAGgtatgtgtgctgttgtggaatgaaatctgatgaatggaactgcatattcactctatgcatgcccaaatgatgggctctgattcatgtgtgcctgcacttgtag
- - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG