Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTACCAATAGGGTCAACCTGACACCAGTTGCACTGATGGAGGGTGGGGCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAGgtatctacatttatcatatcatcaccaggaatcttgaacaccacatattcatggtggctgtcttatggctcatttgacttacctatccagctagaacaga...

Basic information

species Zea mays
transcript GRMZM2G172322_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G172322_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g06740.1 (Oryza sativa), 5'ss of exon 6
ATGTTACCAATAGGGTCAACCTGACACCAGTTGCACTGATGGAGGGTGGGGCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAGgtatctacatttatcatatcatcaccaggaatcttgaacaccacatattcatggtggctgtcttatggctcatttgacttacctatccagctagaacaga----
|||||||  |||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| || |||||  ||||||||||||||||||||||||||||| ||   |   | |||||  |  |      ||  ||| | ||| ||   || |  ||| || | | |  | |    |    |        | | |      
ATGTTACTGATAGGGTCAACCTGACACCAGTTGCACTTATGGAAGGTGGTGCATTTGCAAAAACAGTGTTTGGTGATGAACCTACCAAACCAGATTACAGgtatgtaggatatccctatcaagaatacctcagtt--acatcgcatgtttgagg-gaatgt-ttgttgttgctgtacagtgtacacttgagctgcatatttttg

upper sequence: GRMZM2G172322_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv07s0141g00390.t01 (Vitis vinifera), 5'ss of exon 6
ATGTTACCAATAGGGTCAACCTGACACCAGTTGCACTGATGGAGGGTGGGGCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAGgt-----atctacatt-tatcatatcatcaccaggaatcttgaacac---cacatattcatggtggctgtcttatggct-catttgact--tacctatccagctagaacaga
|||| ||  ||||  | ||  |||| ||||||||  |||||||||| || ||||| || |||||| | ||||| |||||||| || ||||||||||| ||||     |||||  || |   | ||  |      | ||  |   |      |   |||||  |  |||    | | | | ||||| |||  |  ||   |            
ATGTAACAGATAGAATAAATTTGACTCCAGTTGCTTTGATGGAGGGAGGAGCATTAGCTAAAACTCTATTTGGGAATGAACCAACAAAACCAGATTATAGgtgttctatctattttgtgcaaaattgtttggtagcattgttggcgtggataaggattcagagatgctcctgtctagatacatttaactattgtctgctc------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149037276|gb|EE155319.2|EE155319
EST:     GCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAG                         AGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
genomic: GCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAGgtatctacat ... tttttggcagAGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
EST: gi|211393001|gb|FL405406.1|FL405406
EST:     GCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAG                         AGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
genomic: GCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAGgtatctacat ... tttttggcagAGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
EST: gi|60359695|gb|DN226668.1|DN226668
EST:     GCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAG                         AGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
genomic: GCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAGgtatctacat ... tttttggcagAGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
EST: gi|211356738|gb|FL440505.1|FL440505
EST:     GCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAG                         AGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
genomic: GCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAGgtatctacat ... tttttggcagAGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
EST: gi|148956137|gb|EC901907.2|EC901907
EST:     CATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAG                         AGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
genomic: CATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAGgtatctacat ... tttttggcagAGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
EST: gi|149101004|gb|EE187101.2|EE187101
EST:     GCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAG                         AGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
genomic: GCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAGgtatctacat ... tttttggcagAGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
EST: gi|71319218|gb|DR796369.1|DR796369
EST:     GCATTGGCGAAAACTGTCTTTGGCAATGAACCTACCAACCCAGATTACAG                         AGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
genomic: GCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAGgtatctacat ... tttttggcagAGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
EST: gi|93017205|gb|EB642725.1|EB642725
EST:     GCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAACCCAGATTACAG                         AGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
genomic: GCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAGgtatctacat ... tttttggcagAGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
EST: gi|211356737|gb|FL440504.1|FL440504
EST:     GCATTTGCGAAAACTGTCTTTGGCAATGAACCTCCCCAACCAGATTACAG                         AGCTATACCTTCTGCTGTGTTCTCCCCAACCACCAATAGGACAAGTTGGTC
genomic: GCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAGgtatctacat ... tttttggcagAGCTATACCTTCTGCTGTGTTCT-CCCAACCACCAATAGGACAAGTTGGTC
EST: gi|211484881|gb|FL392986.1|FL392986
EST:     GCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAG                         AGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
genomic: GCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAGgtatctacat ... tttttggcagAGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
EST: gi|76932106|gb|DV172946.1|DV172946
EST:     GCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAG                         AGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
genomic: GCATTTGCGAAAACTGTCTTTGGCAATGAACCTACCAAACCAGATTACAGgtatctacat ... tttttggcagAGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
EST: gi|60398346|gb|DN231162.1|DN231162
EST:     AAACCAGATTACAG                         AGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT
genomic: AAACCAGATTACAGgtatctacat ... tttttggcagAGCTATACCTTCTGCTGTGTTCTCCCAACCACCAATAGGACAAGTTGGTCT