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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGTGATGGTGAAGACAAATATCTCATAGCTACATCAGAGCAGCCTTTATGTGCTTATCACTTAGGTGATAGAATATACCCTGCTGAACTTCCAATCAAgtgagtaatttcgatcttcagtttctttatcttttagtgacacactatcaaatttaatcataaataaattacatacatatag

Basic information

species Zea mays
transcript GRMZM2G172101_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G172101_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g10190.1 (Oryza sativa), 5'ss of exon 6
CAGGTGATGGTGAAGACAAATATCTCATAGCTACATCAGAGCAGCCTTTATGTGCTTATCACTTAGGTGATAGAATATACCCTGCTGAACTTCCAATCAAgtgagtaatttc--gatcttcagtttctttatcttttagtgacacactatca-aatttaatcataaataaattacatacatatag
|||| ||||| || || || ||||||||||||||||| ||||| || || ||||| |||||  | |||||| |||| || ||||||||| | ||||| | ||| ||||| ||   || |   ||||  ||   |||   |||    |  |   | ||| || |||| |   || |  |  ||   
CAGGCGATGGAGAGGAAAAGTATCTCATAGCTACATCTGAGCAACCGTTGTGTGCGTATCATCTTGGTGATCGAATTTATCCTGCTGAATTGCCAATTAGgtgggtaatgtctaaatttagggtttggtttggtttggttgatgtgcgctagcagtttgatgataatt---ttgccaatttag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31351150|gb|CD435507.1|CD435507
EST:     TGTGCTTATCACTTAGGTGATAGAATATACCCTGCTGAACTTCCAATCAA                         ATATGCTGGGTACTCCACATGCTTCCGGAAGGAAGCTGGTTCGCATGGAAG
genomic: TGTGCTTATCACTTAGGTGATAGAATATACCCTGCTGAACTTCCAATCAAgtgagtaatt ... atacatatagATATGCTGGGTACTCCACATGCTTCCGGAAGGAAGCTGGTTCGCATGGAAG
EST: gi|31352352|gb|CD436709.1|CD436709
EST:     TGTGCTTATCACTTAGGTGATAGAATATACCCTGCTGAACTTCCAATCAA                         ATATGCTGGGTACTCCACATGCTTCCGGAAGGAAGCTGGTTCGCATGGAAG
genomic: TGTGCTTATCACTTAGGTGATAGAATATACCCTGCTGAACTTCCAATCAAgtgagtaatt ... atacatatagATATGCTGGGTACTCCACATGCTTCCGGAAGGAAGCTGGTTCGCATGGAAG