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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatcagaatttttatttcattcatttttaattcctgcaaacctaatgggtctgaactgatctttcatttatctgaaagacactaccatggtatgt...

Basic information

species Zea mays
transcript GRMZM2G171604_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171604_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g10640.1 (Oryza sativa), 5'ss of exon 6
ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatcagaatttttatttcattcatttttaattcctgcaaacctaatgggtctgaactgatctttcatttatctgaaagacactaccatggtatgt-----------
||||||||||| ||||| |||||||| ||||||||||| ||||| || |||||||| |||||||||||||||||||||||||| ||||||||| | |  || | | | |     | ||||     ||| ||| ||| | || |  || |   | | |   | |||| ||||| ||||  ||  || |           
ATTGTTTCAAGTGCTATAATTGACAAGTACATTGGAGAGAGTGCCCGCTTGATTAGGGAAATGTTTGGCTATGCACGTGATCATCAAgtaagtctta--atctctctct-----acttttg---tctggaaagctagttggacctaaattggcatcctcatttctgcaagac-ctactctgacatttacatgatctaa

upper sequence: GRMZM2G171604_T01 (Zea mays), 5'ss of exon 6
lower sequence: EFJ28962 (Selaginella moellendorffii), 5'ss of exon 6
ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatcagaatttttatttcattcatttttaattcctgcaaacctaatgggtctgaactgatctttcatttatctgaaagacactaccatggtatgt
 | || || || |||||  | ||||| |||||||| || ||||||||  | ||  | |||||||| |||||||| |||||||||||||||  | ||    |   |  |  |  ||||   | ||        | |    |                                               
GTGGTGTCGAGTGCTATCGTCGACAAGTACATTGGTGAGAGTGCTCGGCTAATCCGTGAAATGTTCGGCTATGCTCGTGATCACCAAgta--tgtcgcgctagcttatcaaaacattgacatttttcttttcctttgcag-----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211350466|gb|FL030237.1|FL030237
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTT
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTT
EST: gi|148999624|gb|EE036609.2|EE036609
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGC
EST: gi|149111231|gb|EE294729.2|EE294729
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGA
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGA
EST: gi|87157334|gb|DY402123.1|DY402123
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGG
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGG
EST: gi|211475169|gb|FL103102.1|FL103102
EST:     ATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: ATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|211472644|gb|FL103081.1|FL103081
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|211472649|gb|FL103086.1|FL103086
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|211475166|gb|FL103099.1|FL103099
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|211472653|gb|FL103090.1|FL103090
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|211475162|gb|FL103095.1|FL103095
EST:     AAAGTGCTCGTTTGATTANAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|211472645|gb|FL103082.1|FL103082
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|148936301|gb|EC880384.2|EC880384
EST:     AAGTGCTCGTTTGATTAGAGAAAATGTT-GGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAGTGCTCGTTTGATTAGAGAAA-TGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|211475164|gb|FL103097.1|FL103097
EST:     AAAGTGCTCGTTTGATTANAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|211475161|gb|FL103094.1|FL103094
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|211475163|gb|FL103096.1|FL103096
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|93284400|gb|EB676664.1|EB676664
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGA
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGA
EST: gi|211475167|gb|FL103100.1|FL103100
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|149080389|gb|EE169410.2|EE169410
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGAT
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGAT
EST: gi|148959843|gb|EE153075.2|EE153075
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|148953590|gb|EC898944.2|EC898944
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAN                         CCATGCATCATCTTCATGGATGAAATTGATG
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATG
EST: gi|148967099|gb|EE018270.2|EE018270
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|211475172|gb|FL103105.1|FL103105
EST:     ATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: ATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|211472651|gb|FL103088.1|FL103088
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|211475168|gb|FL103101.1|FL103101
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|5325115|gb|AI783306.1|AI783306
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|67023560|gb|CO452309.1|CO452309
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|211475159|gb|FL103092.1|FL103092
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|211475165|gb|FL103098.1|FL103098
EST:     AAAGTGCTCGTTTGATTANAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|211472648|gb|FL103085.1|FL103085
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|211472650|gb|FL103087.1|FL103087
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|211472646|gb|FL103083.1|FL103083
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGACACTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|148931017|gb|EC873580.2|EC873580
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAA
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAA
EST: gi|67033051|gb|CO461800.1|CO461800
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCAC-AA                         N
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctag-
EST: gi|67033051|gb|CO461800.1|CO461800
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCAC-AA                         N
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctag-
EST: gi|211472652|gb|FL103089.1|FL103089
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|148979144|gb|EE026532.2|EE026532
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|67024916|gb|CO453665.1|CO453665
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|211475171|gb|FL103104.1|FL103104
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|148964792|gb|EC906040.2|EC906040
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGG
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGG
EST: gi|149112655|gb|EE191390.2|EE191390
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|149100597|gb|EE186683.2|EE186683
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
EST: gi|149009942|gb|EE041784.2|EE041784
EST:     AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAA                         CCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC
genomic: AAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 114

ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTCAGTGAGGGAACTAGTGCTGATCGTGAGATCCAGCGGACGTTGATGGAAC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 48

ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTCAGTGAGGGAACTAGTGCTGATCGTGAGATCCAGCGGACGTTGATGGAAC


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 42

ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTCAGTGAGGGAACTAGTGCTGATCGTGAGATCCAGCGGACGTTGATGGAAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 58

ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatca ... tcttttctagCCATGCATCATCTTCATGGATGAAATTGATGCCATTGGTGGGCGAAGATTCAGTGAGGGAACTAGTGCTGATCGTGAGATCCAGCGGACGTTGATGGAAC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGTTTCAAGCGCTATTATTGACAAATACATTGGAGAAAGTGCTCGTTTGATTAGAGAAATGTTTGGCTATGCACGTGATCACCAAgtaagtatcagaatttttatttcattcatttttaattcctgcaaacctaatgggtctgaactgatctttcatttatctgaaagacactaccatggtatgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagaca