Sequence
atgc intronic sequence ATGC exonic sequenceTACCAGTTGAACATGGACTCCTCCTGGACAATCTCCTGGACCTTGCTCACGCTCCTTTCACACACACGTCCACCTTTGCCAAGGGCTGGAGTGTGCCAAGgtatgtatgtatgtatgtatgtatgtatgtatgtatgtataccttccataccacttcttcaattcgtcaggaagctgactgtgttccttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G171390_T04 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 5'ss of exon 7
TACCAGTTGAACATGGACTCCTCCTGGACAATCTCCTGGACCTTGCTCACGCTCCTTTCACACACACGTCCACCTTTGCCAAGGGCTGGAGTGTGCCAAGgtatgtatgtatgtatgtatgtatgtatgtatgtatgtataccttccataccacttcttcaattcgtcaggaagctgactgtgttccttcag----------------------------------
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TACCAGTGGAGCATGGACTTCTTCTGGACAATCTATTAGATCTTGCTCATGCTCCTTTTACTCATACATCCACCTTTGCCAAGGGTTGGAGTGTTCCAAGgtatttacatacatatattttcacagccatgtggaattctttttttttt----ttttagaaaatggatagccatgtggaaatgt--cttcagaaatcatcatgctgatgctatgttcatttcccag
upper sequence: GRMZM2G171390_T04 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 5'ss of exon 7
TACCAGTTGAACATGGACTCCTCCTGGACAATCTCCTGGACCTTGCTCACGCTCCTTTCACACACACGTCCACCTTTGCCAAGGGCTGGAGTGTGCCAAGgtatgtatgtatgtatgtatgtatgtatgtatgtatgtataccttccataccacttcttcaattcgtcaggaagctgactgtgttccttcag
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TACCGGTGGAGCATGGACTTCTGCTGGACAATCTATTAGATATTGCTCATGCTCCTTTTGCTCATACGTCCACCTTTGCCAAGGGTTGGAGTGTTCCAAGgtatttacatacatatcaac-taaggacaactggccattgaaaatttttcacaaatcatcatgctgatgctatattcatc----tttgtcag
upper sequence: GRMZM2G171390_T04 (Zea mays), 5'ss of exon 6
lower sequence: AT1G44446.2 (Arabidopsis thaliana), 5'ss of exon 7
TACCAGTTGAACATGGACTCCTCCTGGACAATCTCCTGGACCTTGCTCACGCTCCTTTCACACACACGTCCACCTTTGCCAAGGGCTGGAGTGTGCCAAGgtatgtatgtatgtatgtatgtatgtat-gtatgtatgtataccttccataccacttcttcaattcgtcag-gaagctgactgtgttccttcag
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TCCCGGTGGAACACGGTTTACTTCTAGATAATCTCTTGGATCTTGCTCATGCCCCATTCACTCATACATCCACTTTTGCAAAAGGCTGGAGTGTCCCAAGgtttcttttaactctcattactctgttcagtgctaagatgaaacttggtttaagctttctgtttttggtactgcag------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71445817|gb|DR826867.1|DR826867EST: GCTCCTTTCACACACACGTCCACCTTTGCCAAGGGCTGGAGTGTGCCAAG TTTGGTCAAGTTCCTGACACCCGCGTCTGGGCTCCAAGGGTACTGGGACCC
genomic: GCTCCTTTCACACACACGTCCACCTTTGCCAAGGGCTGGAGTGTGCCAAGgtatgtatgt ... gttccttcagTTTGGTCAAGTTCCTGACACCCGCGTCTGGGCTCCAAGGGTACTGGGACCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACCAGTTGAACATGGACTCCTCCTGGACAATCTCCTGGACCTTGCTCACGCTCCTTTCACACACACGTCCACCTTTGCCAAGGGCTGGAGTGTGCCAAGgtatgtatgtatgtatgtatgtatgtatgtatgtatgtataccttccataccacttcttcaattcgtcaggaagctgactgtgttccttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA