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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATAAACATGGAATGGGGGAACTTTAGGTCCACCCACCTTCCACTGACTGAATTTGATGTAGCCTTGGATGCAGAAAGTTTGAACCCTGATGAACAGgtattgcccttcatatgctacagattatgatcttttaccctttggtttttattgactctgcagcattatttccaacccag

Basic information

species Zea mays
transcript GRMZM2G171373_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171373_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g52450.2 (Oryza sativa), 5'ss of exon 5
-GTGATAAACATGGAATGGGGGAACTTTAGGTCCACCCACCTTCCACTGACTGAATTTGATGTAGCCTTGGATGCAGAAAGTTTGAACCCTGATGAACAGgtattgcccttcatatgctacagattatgatcttttaccctttggtttttattgactct--gcagcattatttccaacccag
 || ||||||||||||||||| ||||||| |||| | || |||||||| ||||||||||||  ||  |||||||||||||||||||||||||   |||||||||| |||||               ||| | ||   |||||| ||   || ||||||     |    |||| ||   ||||
GGTAATAAACATGGAATGGGGTAACTTTAAGTCCTCACATCTTCCACTTACTGAATTTGATCAAGAGTTGGATGCAGAAAGTTTGAACCCTGGCAAACAGgtattaccctt---------------atgttgttgctcccttttgtgggtaatgactcatgataaggatattgccctaccag

upper sequence: GRMZM2G171373_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g52450.1 (Oryza sativa), 5'ss of exon 6
GTGATAAACATGGAATGGGGGAACTTTAGGTCCACCCACCTTCCACTGACTGAATTTGATGTAGCCTTGGATGCAGAAAGTTTGAACCCTGATGAACAGgtattgcccttcatatgctacagattatgatcttttaccctttggtttttattgactct--gcagcattatttccaacccag
|| ||||||||||||||||| ||||||| |||| | || |||||||| ||||||||||||  ||  |||||||||||||||||||||||||   |||||||||| |||||               ||| | ||   |||||| ||   || ||||||     |    |||| ||   ||||
GTAATAAACATGGAATGGGGTAACTTTAAGTCCTCACATCTTCCACTTACTGAATTTGATCAAGAGTTGGATGCAGAAAGTTTGAACCCTGGCAAACAGgtattaccctt---------------atgttgttgctcccttttgtgggtaatgactcatgataaggatattgccctaccag

upper sequence: GRMZM2G171373_T01 (Zea mays), 5'ss of exon 6
lower sequence: EFJ14634 (Selaginella moellendorffii), 5'ss of exon 6
GTGATAAACATGGAATGGGGGAACTTTAGGTCCACCCACCTTCCACTGACTGAATTTGATGTAGCCTTGGATGCAGAAAGTTTGAACCCTGATGAACAGgtattgccctt-catatgct---acagattatgatcttttaccctttggtttttattgactctgcagcattatttccaacccag
||||| ||||||||||||||||||||  ||||| | |||||||||  |||  |  | || |  | | |||| || || ||  | ||||| |  || |||||      ||| ||  ||||   |||| | | |    | | ||   | |                                   
GTGATCAACATGGAATGGGGGAACTTCTGGTCCTCGCACCTTCCAAAGACCAAGGTCGACGACGACCTGGACGCGGACAGCGTCAACCCCGGAGATCAGgtgagatacttgcaattgcttgtacagctgacgcagctgtgcctggtag-----------------------------------

upper sequence: GRMZM2G171373_T01 (Zea mays), 5'ss of exon 6
lower sequence: EFJ26298 (Selaginella moellendorffii), 5'ss of exon 6
GTGATAAACATGGAATGGGGGAACTTTAGGTCCACCCACCTTCCACTGACTGAATTTGATGTAGCCTTGGATGCAGAAAGTTTGAACCCTGATGAACAGgtattgccctt-catatgct---acagattatgatcttttaccctttggtttttattgactctgcagcattatttccaacccag
||||| ||||||||||||||||||||  ||||| | |||||||||  |||  |  |||| |  | | |||| || || ||  | ||||| |  || |||||      ||| ||  ||||   |||| | | |    | | ||   | |                                   
GTGATCAACATGGAATGGGGGAACTTCTGGTCCTCGCACCTTCCAAAGACCAAGGTTGACGACGACCTGGACGCGGACAGCGTCAACCCCGGAGATCAGgtgagatgcttgcaattgcttgtacagctgacgcagctgtgcctggtag-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71762982|gb|DR960919.1|DR960919
EST:     CTGAATTTGATGTAGCCTTGGATGCAGAAAGTTTGAACCCTGATGAACAG                         ATTTATGAGAAGTTGATCTCTGGCATGTATATGGGGGAAATTGTCCGAAGG
genomic: CTGAATTTGATGTAGCCTTGGATGCAGAAAGTTTGAACCCTGATGAACAGgtattgccct ... tccaacccagATTTATGAGAAGTTGATCTCTGGCATGTATATGGGGGAAATTGTCCGAAGG