1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCTACTCGTCTCCCTGAATATGATGTACCTGTTGTTGACAAGGCTGTGGATGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGgtttgttcttgttaatctaatttgtcgtttgaaaaatctgtttgggtttttttctagtacctgacatttgattttttttgttagatgcag
species | Zea mays |
transcript | GRMZM2G171354_T04 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAG ATGCAGACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGAEST: gi|40337029|gb|CK371099.1|CK371099
genomic: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGgtttgttctt ... ttagatgcagA--C----TCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGG
EST: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGATGCAGEST: gi|71447517|gb|DR828567.1|DR828567
genomic: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCC---A---AGgtttgttctt ... ttaga
EST: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAG ACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGGATAAGAEST: gi|37397469|gb|CF636033.1|CF636033
genomic: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGgtttgttctt ... ttagatgcagACTCTTCTGTGAAAACTATGTCCAGGCCATCTGATTCCTCCTGGGATAAGA
EST: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGATGCAGEST: gi|45568449|gb|CK986069.1|CK986069
genomic: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCC---A---AGgtttgttctt ... ttaga
EST: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGATGCAG
genomic: TGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCC---A---AGgtttgttctt ... ttaga
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTACTCGTCTCCCTGAATATGATGTACCTGTTGTTGACAAGGCTGTGGATGCTACATGGAGAAGAGAGCAGCCACGAAAGATACCATTCATGCCCCAAGgtttgttcttgttaatctaatttgtcgtttgaaaaatctgtttgggtttttttctagtacctgacatttgattttttttgttagatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG