Sequence
atgc intronic sequence ATGC exonic sequenceCGAGCTGCCCGAGTTCTTCGGCGGCACTTGCAACTGCGAGGGCGGCTGCATGCGCTCCGACAAAGGGCCATGGAAGGACCCTGAGATCCTCAAGgttccgtctacctgtctagattactttgcgctccactccgacgaagggccagccatgtgaagctggtagacgatcgatgctgtttttcatccggttctttctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G171349_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g04030.3 (Oryza sativa), 5'ss of exon 6
CGAGCTGCCCGAGTTCTTCGGCGGCACTTGCAACTGCGAGGGCGGCTGCATGCGCTCCGACAAAGGGCCATGGAAGGACCCTGAGATCCTCAAGgttccgtctacctgtctagattac-tttgcgctccac-tccgacgaagggccagccatgtgaagctggtagacgatcgatgctgtttttcatccggttctttctcag------------------------------------------------------
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CGAATTGCCTGAGTTCCTTGGTGGCACTTGCACCTGCGAAGGCGGCTGCATGCGCTCCGACAAAGGGCCATGGAAAGATCCTGAAATCATAAAGgttatctgaaaat-tatagtgcatatatgcatcttacatgtgctagctaagtagcta-gtggagatttgccatgaactgaactgctcagc-cctagtgctgtctatatatgaagttatgaacatttctgatttggttctgatgcttcatctgatttttcag
upper sequence: GRMZM2G171349_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT4G39180.1 (Arabidopsis thaliana), 5'ss of exon 9
CGAGCTGCCCGAGTTCTTCGGCGGCACTTGCAACTGCG------AGGGCGGCTGCATGCGCTCCGACAAAGGGCCATGGAAGGACCCTGAGATCCTCAAGgttccgtctacctgtctagattactttgcgctccactccgacgaagggccagccatgtgaagctggtagacgatcgatgctgtttttcatccggttctttctcag
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TGAACTGCCTGAGTTCTTGGGTGGTAAGTGCACCTGCGCAGACAAAGGTGGATGTATGCGTTCAGACAAAGGTCCATGGAACGACCCTGAGATCTTCAAGgtagt-tctatagaacta-actaccttaagaaat-ccttgatcaaaaac--gttatattacaatgtaac----ttgggattaatatgtaaactatttatacacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|160481289|gb|EY254211.1|EY254211EST: GCTGCATGCGCTCCGACAAAGGGCCATGGAAGGACCCTGAGATCCTCAAG ATGGTCCAATGCGGCATGGGGAGATGCGGGATGAACAGCGGGGACCCTCGC
genomic: GCTGCATGCGCTCCGACAAAGGGCCATGGAAGGACCCTGAGATCCTCAAGgttccgtcta ... tctttctcagATGGTCCAATGCGGCATGGGGAGATGCGGGATGAACAGCGGGGACCCTCGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGAGCTGCCCGAGTTCTTCGGCGGCACTTGCAACTGCGAGGGCGGCTGCATGCGCTCCGACAAAGGGCCATGGAAGGACCCTGAGATCCTCAAGgttccgtctacctgtctagattactttgcgctccactccgacgaagggccagccatgtgaagctggtagacgatcgatgctgtttttcatccggttctttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC