1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAGCTCATCGGCATCAATAACCGTAATCTCGgtatgctgtttttgttgaacttttacactgatttcaattcctagtgataccagataagtcttttgtctattttatcacctgaaatcagcagtggatccag...
species | Zea mays |
transcript | GRMZM2G169516_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTTAGGGATTGATGGTGTACAGCTCATCGGCATCAATAACCGTAATCTCG AGACATTTGAAGTTGATATTACAAACACAAAAAAGCTTCTGGAAGGTGAACEST: gi|84969902|gb|DV170843.2|DV170843
genomic: TTTAGGGATTGATGGTGTACAGCTCATCGGCATCAATAACCGTAATCTCGgtatgctgtt ... ccttttccagAGACATTTGAAGTTGATATTACAAACACAAAAAAGCTTCTGGAAGGTGAAC
EST: TTTAGGGATTGATGGTGTACAGCTCATCGGCATCAATAACCGTAATCTCG AGACATTTGAAGTTGATATTACAAACACAAAAAAGCTTTTGGAAGGTGAACEST: gi|78121834|gb|DV540218.1|DV540218
genomic: TTTAGGGATTGATGGTGTACAGCTCATCGGCATCAATAACCGTAATCTCGgtatgctgtt ... ccttttccagAGACATTTGAAGTTGATATTACAAACACAAAAAAGCTTCTGGAAGGTGAAC
EST: TTTAGGGATTGATGGTGTACAGCTCATCGGCATCAATAACCGTAATCTCG AGACATTTGAAGTTGATATTACAAACACAAAAAAGCTTCTGGAAGGTGAACEST: gi|91870855|gb|EB401116.1|EB401116
genomic: TTTAGGGATTGATGGTGTACAGCTCATCGGCATCAATAACCGTAATCTCGgtatgctgtt ... ccttttccagAGACATTTGAAGTTGATATTACAAACACAAAAAAGCTTCTGGAAGGTGAAC
EST: TTTAGGGATTGATGGTGTACAGCTCATCGGCATCAATAACCGTAATCTCG AGACATTTGAAGTTGATATTACAAACACAAAAAAGCTTCTGGAAGGTGAAC
genomic: TTTAGGGATTGATGGTGTACAGCTCATCGGCATCAATAACCGTAATCTCGgtatgctgtt ... ccttttccagAGACATTTGAAGTTGATATTACAAACACAAAAAAGCTTCTGGAAGGTGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAGCTCATCGGCATCAATAACCGTAATCTCGgtatgctgtttttgttgaacttttacactgatttcaattcctagtgataccagataagtcttttgtctattttatcacctgaaatcagcagtggatccag
- - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - AGCTCA