1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACGCTGACGTACGGTTAACAAGGAGGATCCATCGTGATACCATTGACAAGGGTAGAGATCTCAAAGCTGTGTTAGAACAGgttacgaagcttcctctattgcaattttgttgtgcatcaaatctaataacgtttagcagaccttgtgtagcatttttatctaataaaatattcttgtcttgttgcataatttatgttaagctatctgttatctactcttttttgctgtttttggctaacaaatctttttttccacag
species | Zea mays |
transcript | GRMZM2G169462_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATCGTGATACCATTGACAAGGGTAGAGATCTCAAAGCTGTGTTAGAACAG TTCTCAAAATTTGTTAAGCCTGCTTTTGAAGACTTCATCCTCCCCACGAAGEST: gi|71439100|gb|DR820150.1|DR820150
genomic: ATCGTGATACCATTGACAAGGGTAGAGATCTCAAAGCTGTGTTAGAACAGgttacgaagc ... ttttccacagTTCTCAAAATTTGTTAAGCCTGCTTTTGAAGACTTCATCCTCCCAACGAAG
EST: ATCGTGATACCATTGACAAGGGTAGAGATCTCAAAGCTGTGTTAGAACAG TTCTCAAAATTTGTTAAGCCTGCTTTTGAAGACTTCATCCTCCCAACGAAGEST: gi|5847365|gb|AW000444.1|AW000444
genomic: ATCGTGATACCATTGACAAGGGTAGAGATCTCAAAGCTGTGTTAGAACAGgttacgaagc ... ttttccacagTTCTCAAAATTTGTTAAGCCTGCTTTTGAAGACTTCATCCTCCCAACGAAG
EST: ATCGTGATACCATTGACAAGGGTAGAGATCTCAAAGCTGTGTTAGAACAG TTCTCAAAATTTGTTAAGCCTGCTTTTGAAGACTTCATCCTCCCAACGAAG
genomic: ATCGTGATACCATTGACAAGGGTAGAGATCTCAAAGCTGTGTTAGAACAGgttacgaagc ... ttttccacagTTCTCAAAATTTGTTAAGCCTGCTTTTGAAGACTTCATCCTCCCAACGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGCTGACGTACGGTTAACAAGGAGGATCCATCGTGATACCATTGACAAGGGTAGAGATCTCAAAGCTGTGTTAGAACAGgttacgaagcttcctctattgcaattttgttgtgcatcaaatctaataacgtttagcagaccttgtgtagcatttttatctaataaaatattcttgtcttgttgcataatttatgttaagctatctgttatctactcttttttgctgtttttggctaacaaatctttttttccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG