1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GACGTTCAAACACAGGGTGACAAATGTTGTGTTCATGGGGATGGGTGAGCCCATGATGAACCTCAAGTCAGTTCTAGAAGCACACCAATGCTTCAATAAGgtctgttgacaagtaactaggctacattcctctcatcctgttaatttgatgcgacaatttaccatgaatatctttccatataagctataactttaacaagtgcgtggatttcatgctgtcag
species | Zea mays |
transcript | GRMZM2G168412_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCATGATGAACCTCAAGTCAGTTCTAGAAGCACACCAATGCTTCAATAAG GAACTAAAAATTGGGCAAAGGATGATGACAATATCTACAGTTGGTGTTCCAEST: gi|88747606|gb|DY531747.1|DY531747
genomic: CCATGATGAACCTCAAGTCAGTTCTAGAAGCACACCAATGCTTCAATAAGgtctgttgac ... atgctgtcagGAACTAAAAATTGGGCAAAGGATGATGACAATATCTACAGTTGGTGTTCCA
EST: CCATGATGAACCTCAAGTCAGTTCTAGAAGCACACCAATGCTTCAATAAG GAACTAAAAATTGGGCAAAGGATGATGACAATATCTACAGTTGGTGTTCCAEST: gi|13150086|gb|BG320408.1|BG320408
genomic: CCATGATGAACCTCAAGTCAGTTCTAGAAGCACACCAATGCTTCAATAAGgtctgttgac ... atgctgtcagGAACTAAAAATTGGGCAAAGGATGATGACAATATCTACAGTTGGTGTTCCA
EST: CCATGATGAACCTCAAGTCAGTTCTAGAAGCACACCAATGCTTCAATAAG GAACTAAAAATTGGGCAAAGGATGATGACAATATCTACAGTTGGTGTTCCAEST: gi|13149611|gb|BG319933.1|BG319933
genomic: CCATGATGAACCTCAAGTCAGTTCTAGAAGCACACCAATGCTTCAATAAGgtctgttgac ... atgctgtcagGAACTAAAAATTGGGCAAAGGATGATGACAATATCTACAGTTGGTGTTCCA
EST: CCATGATGAACCTCAAGTCAGTTCTAGAYGCACACCAATGCTRCAATKAG GAACTKAAAATTGGGCAAAGGATGATGACAATKTCTKCAGTTGGTGTCCCA
genomic: CCATGATGAACCTCAAGTCAGTTCTAGAAGCACACCAATGCTTCAATAAGgtctgttgac ... atgctgtcagGAACTAAAAATTGGGCAAAGGATGATGACAATATCTACAGTTGGTGTTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGTTCAAACACAGGGTGACAAATGTTGTGTTCATGGGGATGGGTGAGCCCATGATGAACCTCAAGTCAGTTCTAGAAGCACACCAATGCTTCAATAAGgtctgttgacaagtaactaggctacattcctctcatcctgttaatttgatgcgacaatttaccatgaatatctttccatataagctataactttaacaagtgcgtggatttcatgctgtcag
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