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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAATGGATGAGATATCAATATTTGTAAAGGATGCAATCTGCAACAACCAATGCCTAGGACGCTGCCTTTATATACATGGTGTACCTGGCACTGGCAAGgtaacagacttatcttttcatggctgctttatggttttatcccacctgctgtggctaaacattaaaccatttttttctgcatctaattttgtcaacctacag

Basic information

species Zea mays
transcript GRMZM2G168249_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168249_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g08790.1 (Oryza sativa), 5'ss of exon 6
AGAAATGGATGAGATATCAATATTTGTAAAGGATGCAATCTGCAACAACCAATGCCTAGGACGCTGCCTTTATATACATGGTGTACCTGGCACTGGCAAGgtaacagacttatcttttcatggctgct-ttatggttttatcccacctgctgtggctaaacattaaaccatttttttctgcatctaattttgtcaacctacag
||||||||| ||||||||   |||||| ||||||||||| |||||  | ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||  ||  ||| |||  || |  || | ||||||| ||  |   | |||||||| ||   ||| | || |||| |||   ||| |||| |||||||  ||
AGAAATGGAGGAGATATCTGCATTTGTGAAGGATGCAATTTGCAATGATCAATGTCTAGGACGCTGCCTTTATATTCATGGTGTACCAGGCACTGGCAAGgtaactaacc-atcctttactgtcccctatgatggtttgatgtccttttctgtggctgaaggctaagcaatatttt-ctgtgcctactttt-tcaacctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30052379|gb|AI065668.2|AI065668
EST:     AATGCCTAGGACGCTGCCTTTATATACATGGTGTACCTGGCACTGGCAAG                         ACTATGAGTGTACTTGCTGTTATGAGGAGGCTGAGATCTGAATTTGATTCT
genomic: AATGCCTAGGACGCTGCCTTTATATACATGGTGTACCTGGCACTGGCAAGgtaacagact ... caacctacagACTATGAGTGTACTTGCTGTTATGAGGAGGCTGAGATCTGAATTTGATTCT
EST: gi|60348765|gb|DN215738.1|DN215738
EST:     GGACGCTGCCTTTATATACATGGTGTACCTGGCACTGGCAAG                         ACTATGAGTGTACTTGCTGTTATGAGGAGGCTGAGATCTGAATTTGATTCT
genomic: GGACGCTGCCTTTATATACATGGTGTACCTGGCACTGGCAAGgtaacagact ... caacctacagACTATGAGTGTACTTGCTGTTATGAGGAGGCTGAGATCTGAATTTGATTCT
EST: gi|211040609|gb|FL332006.1|FL332006
EST:     AATGCCTAGGACGCTGCCTTTATATACATGGTGTACCTGGCACTGGCAAG                         ACTATGAGTGTACTTGCTGTTATGAGGAGGCTGAGATCTGAATTTGATTCT
genomic: AATGCCTAGGACGCTGCCTTTATATACATGGTGTACCTGGCACTGGCAAGgtaacagact ... caacctacagACTATGAGTGTACTTGCTGTTATGAGGAGGCTGAGATCTGAATTTGATTCT
EST: gi|31354612|gb|CD438969.1|CD438969
EST:     AATGCCTAGGACGCTGCCTTTATATACATGGTGTACCTGGCACTGGCAAG                         ACTATGAGTGTACTTGCTGTTATGAGGAGGCTGAGATCTGAATTTGATTCT
genomic: AATGCCTAGGACGCTGCCTTTATATACATGGTGTACCTGGCACTGGCAAGgtaacagact ... caacctacagACTATGAGTGTACTTGCTGTTATGAGGAGGCTGAGATCTGAATTTGATTCT