Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAGgtaattgcattgagcttctatatggatactttatgtgcttcctagttttgtctaaataataatttgtgcttggattgctctatatag

Basic information

species Zea mays
transcript GRMZM2G168176_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168176_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g37870.1 (Oryza sativa), 5'ss of exon 6
ATTTCTGTTCCCCACAATGAGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAGgtaattgcattgagcttctatatggata----ctttatgtgcttcctagttttgtctaaataataatttgtgcttggattgctctatatag
|||||||||||||||||||||||||| || ||||||||||| ||| |||| || ||||||||| |||||||||  ||    ||||||||| || |||     ||| | || |||| ||||| || | | |     |||| | | | | |   || | |||
ATTTCTGTTCCCCACAATGAGATTGACAAGGTTGATAAAGGAGGTCTGGACAAGATGACACTTGTTGAGgtaaaggcgcatagcttctatttgtataatatttttttatgtttccaagtttagtttcagt-----tttgagatcgaact-tgctgtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148943696|gb|EC888763.2|EC888763
EST:     AGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAG                         GTTGGCCCCAGGTTCTGTTTGAATC-AATCAA
genomic: AGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAGgtaattgcat ... ctctatatagGTTGGCCCCAGGTTCTGTTTGAATCCAATCAA
EST: gi|166421475|gb|EG156961.1|EG156961
EST:     ATAAAGTTGATAAAGGTGGTCTGGATAAAATGACACTTATTGAG                         GTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTT
genomic: ATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAGgtaattgcat ... ctctatatagGTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTT
EST: gi|76289777|gb|DV029345.1|DV029345
EST:     AGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAG                         GTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTT
genomic: AGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAGgtaattgcat ... ctctatatagGTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTT
EST: gi|60336677|gb|DN203650.1|DN203650
EST:     AGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAG                         GTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTT
genomic: AGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAGgtaattgcat ... ctctatatagGTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTT
EST: gi|76283913|gb|DV023481.1|DV023481
EST:     AGATGGATAAAGTTGATAAAGGTGGTATGGAAAAAATGACACTTATTGAG                         GTTGGCCCCAGGTTCTG
genomic: AGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAGgtaattgcat ... ctctatatagGTTGGCCCCAGGTTCTG
EST: gi|78180563|gb|DV550891.1|DV550891
EST:     AGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAG                         GTTGGCCCCAGGTTCTGT
genomic: AGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAGgtaattgcat ... ctctatatagGTTGGCCCCAGGTTCTGT
EST: gi|89249178|gb|DY620964.1|DY620964
EST:     AGATTGATAAAGGTGATAAAGGTGGTATGGATAAAATGACACTTATTGAG                         GTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTT
genomic: AGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAGgtaattgcat ... ctctatatagGTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTT
EST: gi|32945542|gb|CF050361.1|CF050361
EST:     AGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAG                         GTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTT
genomic: AGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAGgtaattgcat ... ctctatatagGTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTT
EST: gi|18659405|gb|BM500320.1|BM500320
EST:     AGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAG                         GTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTT
genomic: AGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAGgtaattgcat ... ctctatatagGTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTT
EST: gi|14203242|gb|BG836919.1|BG836919
EST:     AGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAG                         GTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTT
genomic: AGATTGATAAAGTTGATAAAGGTGGTATGGATAAAATGACACTTATTGAGgtaattgcat ... ctctatatagGTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTT