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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGACTCATTCCAGCTCATATCAAGGGAAGGCCGCCGTCATATTACATTGTTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAGgtatgattttttttcttttcctctgttgtttaggcttaggtataaaataatcaagacagtaaatcttcccatgtctgttttattgcttgctcacttctga...

Basic information

species Zea mays
transcript GRMZM2G165969_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165969_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g12780.1 (Oryza sativa), 5'ss of exon 5
AAGACTCATTCCAGCTCATATCAAGGGAAGGCCGCCGTCATATTACATTGTTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAGgtatgattttttttcttttcctctgttgtttaggcttaggtataaaataatcaagacagtaaatcttcccatgtctgttttattgcttgctcacttctga-----
||||||||||||||||||||| ||||| ||||| || ||||||||||||||||| ||||| |||||||||| ||| |||||||||||||| |||||||||||||| | |  | ||  ||   | | |  ||| |  |      | ||||||||||| | || ||| |        |||    ||        ||| |||      
AAGACTCATTCCAGCTCATATAAAGGGCAGGCCACCATCATATTACATTGTTGCAGGCTTCGTTTTTATGGTTGTTTCTGTTCCATATCTCCGATCTGAGgtatgctgtcatctcccttgtccagct--ttatgtgtgaa---ataataatcaagatattacatccttgttcagttgtcaatttttcattctactactgtacgat

upper sequence: GRMZM2G165969_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA17G09970.1 (Glycine max), 5'ss of exon 5
AAGACTCATTCCAGCTCATATCAAGGGAAGGCCGCCGTCATATTACATTGTTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAGgt--atgattttttttcttttcctctgttgtttaggcttaggtataaaataatcaagacagtaaatcttcccatgtctgttttattgcttgctcacttctga
||| || |||||||| || | |||||| | ||| || |||||||| ||| ||||||| ||||||||||   |||| || |||||||||||||| ||||||||   ||  |  |      | |||  |   |      | || |||    |     ||    |     ||    |     |  || |  |        | |  
AAGGCTTATTCCAGCACACAGCAAGGGCAAGCCTCCCTCATATTATATTATTGCTGGATTTGTTTTTACAACTGTTTCGGTTCCATATCTTCGTTCTGAGgtcagtggctaatccatcatccctaggcattaataattcagttatttggtgtcttaggtgttgctgtttgttttactattggtaatattgatctggatgt--

upper sequence: GRMZM2G165969_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA05G01930.1 (Glycine max), 5'ss of exon 5
AAGACTCATTCCAGCTCATATCAAGGGAAGGCCGCCGTCATATTACATTGTTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAGgtatgattttttttcttttcctctg-ttgtttaggcttaggta--taaaataatcaagacagtaaatcttcccatgtctgttttattgcttgctcacttctga-
||| || |||||||| || | |||||| |  || || |||||||| ||| ||||||| ||||||||||   |||| ||||||||||||||||| || ||||| ||    |  | |     | ||  ||   || || |   ||  |    || |        ||  | || |  ||| ||||||| |  |   | | |  ||| 
AAGGCTTATTCCAGCACACAGCAAGGGCAAACCTCCCTCATATTATATTATTGCTGGATTTGTTTTTACAACTGTTTCTGTTCCATATCTTCGTTCCGAGgtctgtggctaatccagcatccctaattccctatgcattaataattccgttatttggtgtcttaggtgttgc--tgtttgttttactattg--ttaatattgat

upper sequence: GRMZM2G165969_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT5G40200.1 (Arabidopsis thaliana), 5'ss of exon 5
AAGACTCATTCCAGCTCATATCAAGGGAAGGCCGCCGTCATATTACATTGTTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAGgtatgattttttttcttttcctctgttgtttaggcttaggtataaaataatcaagacagtaaatcttcccatgtctgttttattgcttgctcacttctga-
 || || || || ||||| || |  || |  || || || || | ||| |||||||||||||| ||||   |||| ||||||||||||||||||||||||||    |||  | ||| |   ||| ||  |||   |   |  |    | ||  |  || | |   ||   ||  || |||      |       ||   | 
GAGGCTAATCCCTGCTCACATAAGTGGCAAACCTCCTTCGTACTTCATCGTTGCTGGCTTTGTATTTACAACTGTCTCTGTTCCATATCTTCGATCTGAGgtcc--tttactgtctctctatct-ttccttactttctcgctttctctcatgcatccattcacagtttatataactatttc-ccattgatatgttttgcag

upper sequence: GRMZM2G165969_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv14s0066g01660.t01 (Vitis vinifera), 5'ss of exon 5
AAGACTCATTCCAGCTCATATCAAGGGAAGGCCGCCGTCATATTACATTGTTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAGgtatgattttttttcttttcctctgttgtttaggcttaggtataaaataatcaagacagtaaatcttcccatgtctgttttattgcttgctcacttctga---------
  | |||||  | || || |||||||| || || || || ||||||||| ||| ||| ||||||||||  || || |||||||||||||| || |||||||||  |  ||||  |  |  || || |    |    |  || |  | | ||  | | | |   | ||   || ||||  ||    ||||  ||||  ||          
GCGGCTCATAGCTGCACACATCAAGGGCAGACCTCCATCCTATTACATTATTGGTGGATTTGTTTTTACAGCAGTATCTGTTCCATATCTGCGTTCTGAGgtac-acattttgaccatgtctttgctccaca----tgtgtgtgcattcat--atataatttttatttttatatctgcattg--acttgtccactgttgtggagatgat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32836083|gb|CD975761.1|CD975761
EST:     TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAG                         TATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
genomic: TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAGgtatgatttt ... tttctgtcagTATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
EST: gi|32834126|gb|CD973804.1|CD973804
EST:     TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAG                         TATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
genomic: TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAGgtatgatttt ... tttctgtcagTATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
EST: gi|33091610|gb|CF051604.1|CF051604
EST:     ATCTTCGATCTGAG                         TATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
genomic: ATCTTCGATCTGAGgtatgatttt ... tttctgtcagTATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
EST: gi|32832305|gb|CD971983.1|CD971983
EST:     TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAG                         TATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
genomic: TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAGgtatgatttt ... tttctgtcagTATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
EST: gi|32832217|gb|CD971895.1|CD971895
EST:     TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAG                         TATGGAAAAGAATATGAATACGATGCCCCCGTGAAGATGTTGGACAAGCAT
genomic: TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAGgtatgatttt ... tttctgtcagTATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
EST: gi|32832159|gb|CD971837.1|CD971837
EST:     TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAG                         TATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
genomic: TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAGgtatgatttt ... tttctgtcagTATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
EST: gi|32833886|gb|CD973564.1|CD973564
EST:     TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAG                         TATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
genomic: TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAGgtatgatttt ... tttctgtcagTATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
EST: gi|32850028|gb|CD989709.1|CD989709
EST:     TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAG                         TATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
genomic: TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAGgtatgatttt ... tttctgtcagTATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
EST: gi|32833979|gb|CD973657.1|CD973657
EST:     TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAG                         TATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
genomic: TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAGgtatgatttt ... tttctgtcagTATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
EST: gi|32832342|gb|CD972020.1|CD972020
EST:     TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAG                         TATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
genomic: TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAGgtatgatttt ... tttctgtcagTATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
EST: gi|32931506|gb|CF036318.1|CF036318
EST:     TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAG                         TATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT
genomic: TTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAGgtatgatttt ... tttctgtcagTATGGAAAAGAATATGAATACGATGCCCCCGTGAAGTTGTTGGACAAGCAT