1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TACCTCTTCGCTGGTGTTGTGGATGGACGCAACATTTGGGCTGATGATCTTGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcattaaaggatatactgttgtttatttgttccctttgtctgtacgttgttcagtaaccaaatacatgatgttcag
species | Zea mays |
transcript | GRMZM2G165747_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG ACAAACTTGTGGTGTCAACCTCCTGCTCACEST: gi|211331525|gb|FL127534.1|FL127534
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTCAC
EST: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG ACAAACTTGTGGEST: gi|32849990|gb|CD989671.1|CD989671
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGG
EST: GCTGCATCTTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAGGG ACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGTTGATCEST: gi|211331526|gb|FL127535.1|FL127535
genomic: GCTGCATC-TCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGTTGATC
EST: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGNTGCTGGCAAGG ACAAACTTGGTGGTGTCAACCEST: gi|211331520|gb|FL127529.1|FL127529
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTG-TGGTGTCAACC
EST: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG ACAAACTTGTGGTGTCAACCTCCTGEST: gi|31361689|gb|CD446046.1|CD446046
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTG
EST: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG ACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCCGTTGATCEST: gi|211333687|gb|FL127545.1|FL127545
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGTTGATC
EST: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG ACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGEST: gi|33101979|gb|CF061939.1|CF061939
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTG
EST: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG ACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGTTGATCEST: gi|211329365|gb|FL127518.1|FL127518
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGTTGATC
EST: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG ACAAACTTGTGGTGTCAACCTCCTGCTEST: gi|211331515|gb|FL127524.1|FL127524
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCT
EST: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG ACAAACTTGTGGTGTCAACCTCCTGCTCEST: gi|211333685|gb|FL127543.1|FL127543
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTC
EST: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG ACAAACTTGTGGTGEST: gi|211327189|gb|FL127498.1|FL127498
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTG
EST: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG ACAAACTTGTGGTGTCAACCTCCTGCTCACTGAGGCACACCGCTGTTGATCEST: gi|31355054|gb|CD439411.1|CD439411
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGTTGATC
EST: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTCATGCCGTTGCTGGCAAGG ACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCCGTTGATCEST: gi|211335851|gb|FL127554.1|FL127554
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGTTGATC
EST: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG ACAAACTTGTGGTGTCAAEST: gi|211335856|gb|FL127559.1|FL127559
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAA
EST: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGNCGTTGCTGGCAAGG ACAAACTTGNGGNGTCAACCTCCTGCTCACTGATGCACACCGCTGGTGATCEST: gi|211331516|gb|FL127525.1|FL127525
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGTTGATC
EST: TGCTGCATCTCTTANCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG ACAAACTTGTGGTG
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACCTCTTCGCTGGTGTTGTGGATGGACGCAACATTTGGGCTGATGATCTTGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcattaaaggatatactgttgtttatttgttccctttgtctgtacgttgttcagtaaccaaatacatgatgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC