Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaattatcctgtccaacagttatgatttgcattagcttgttagttactattgaccttcataatattggctgattgctcag

Basic information

species Zea mays
transcript GRMZM2G165535_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165535_T05 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g58580.2 (Oryza sativa), 5'ss of exon 6
GAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaattatcctgtccaacagttatgatttg-cattagcttgttagttactattgaccttcataatattggctgattgctcag
||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||  | ||| || |  | ||   ||| | ||  ||||  |||   || |   | ||   |   ||  |            
GAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGgtcagtgaacaaacctatctactaattcccattgggcaacagctccttatggaccaaataactgttt--catcag------------

upper sequence: GRMZM2G165535_T05 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA18G46390.1 (Glycine max), 5'ss of exon 7
-GAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaattatcctgtccaacagttatgatttgcattagcttgtta----gttactattgaccttcataatattggctgattgctcag-------
 || ||||||||||| || |||||||| |||||||| ||||| ||||| ||||| |||| |||    |     |   || |  ||| || |   |    ||||||    |||| |||  | ||      || |   ||||     |        
GGAGTTTATTAACTTTACACTTCATTATATTGCTGATTTGGACATCCCCATTAAGAggttagtgggattcagagattaatatatat-atatttttagatttgttataatgtta-tatgaaactgttggttactaattgatataaaatattttta

upper sequence: GRMZM2G165535_T05 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA09G39800.1 (Glycine max), 5'ss of exon 7
GAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaattatcctgtccaacagttatgatttgcat-tagcttgttagttactattgaccttcataatattggctgattgctcag---------
|| ||||||||||| || |||||||| |||||||| ||||| ||||| ||||| |||| |||    |     |   || | || |  |||  |  |   || | |  |  |||  | ||      || |   ||||    ||          
GAGTTTATTAACTTTACACTTCATTATATTGCTGATTTGGACATCCCCATTAAGAGgttagtgggattcagaggttaatattttttttttctagatttgttatgatgttatatgaaactgttggttactaattgatataacaatatttttag

upper sequence: GRMZM2G165535_T05 (Zea mays), 5'ss of exon 7
lower sequence: Vv15s0046g03520.t01 (Vitis vinifera), 5'ss of exon 6
GAATTTATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaattat---cctgtccaacagttat-gatttgcattagcttgttagttactattgaccttcataatattggctgattgctcag
||| ||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||| ||  ||  |    ||||   | |||||||  |||| ||||   | | | | |||  |   |  || |||| |       ||  ||||
GAAATTATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaagcagaaacctgaatagcagttattaatttacatt---tagattgatacgttc--ctctcttaatttc------ttcttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6020771|gb|AW065579.1|AW065579
EST:     NTTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG                         GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
genomic: -TTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: gi|78118501|gb|DV536885.1|DV536885
EST:     ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG                         GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: gi|86471496|gb|DY237866.1|DY237866
EST:     TCATTACATTGCTGACTTGGATATCCCAATTAAAAG                         GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
genomic: TCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: gi|40334667|gb|CK368737.1|CK368737
EST:     ATTAACTTCACTCTTCATTATATTGCTGACTTGGATATCCCAATTAAAAG                         GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: gi|71449147|gb|DR830197.1|DR830197
EST:     ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG                         GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: gi|71763428|gb|DR961365.1|DR961365
EST:     ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG                         GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: gi|74245816|gb|DT653730.1|DT653730
EST:     ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG                         GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: gi|71299719|gb|DR785870.1|DR785870
EST:     ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG                         GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: gi|32919710|gb|CF024522.1|CF024522
EST:     ATTAACTTCACTCTTCATTATATTGCTGACTTGGATATCCCAATTAAAAG                         GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: gi|14646044|gb|BI180233.1|BI180233
EST:     ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG                         GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: gi|148947648|gb|EC893128.2|EC893128
EST:     ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG                         GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: gi|71773498|gb|DR971398.1|DR971398
EST:     ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG                         GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: gi|148943662|gb|EC888726.2|EC888726
EST:     ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG                         GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: gi|6056459|gb|AW090849.1|AW090849
EST:     ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG                         GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: gi|148947872|gb|EC893365.2|EC893365
EST:     TCATTCCATTGCTGACTTGGATATCCCAATTAAAAG                         GGGGACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
genomic: TCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: gi|71299718|gb|DR785869.1|DR785869
EST:     ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG                         GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: gi|76280414|gb|DV019982.1|DV019982
EST:     ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG                         GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG