1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTATTGGCACGTACCATGATTGGTGTGAGGCTTTCTCAACGTACCCGAGGACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAGgtaaagaatgcctttgctgtttaattctgctctagaaattttctttaccgttcactaagtcgtatggttttttgtatgatgtcttccttttgtgggcggccttatttggtaacaaggttttaaaatgcccacagcttaagcaagtagatactaactatggagtggtcgcag
species | Zea mays |
transcript | GRMZM2G164916_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAG GTGTGACATAACGTACATCCTACTGGAGATGGACCGAATTCTAAGGCCTGAEST: gi|22472582|gb|BU037062.1|BU037062
genomic: ACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAGgtaaagaatg ... gtggtcgcagGTGTGACATAACGTACATCCTACTGGAGATGGACCGAATTCTAAGGCCTGA
EST: ACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAG GTGTGACATAACGTACATCCTACTGGAGATGGACCGAATTCTAAGGCCTGAEST: gi|76018660|gb|DT945830.1|DT945830
genomic: ACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAGgtaaagaatg ... gtggtcgcagGTGTGACATAACGTACATCCTACTGGAGATGGACCGAATTCTAAGGCCTGA
EST: ACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAG GTGTGACATAACGTACATCCTACTGGAGATGGACCGAATTCTAAGGCCTGAEST: gi|20507065|gb|BQ279469.1|BQ279469
genomic: ACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAGgtaaagaatg ... gtggtcgcagGTGTGACATAACGTACATCCTACTGGAGATGGACCGAATTCTAAGGCCTGA
EST: ACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGCTACCAGGACAG GTGTGACATAACGTACATCCTACTGGAGATGGACCGAATTCTAAGGCCTGAEST: gi|67018896|gb|CO447645.1|CO447645
genomic: ACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAGgtaaagaatg ... gtggtcgcagGTGTGACATAACGTACATCCTACTGGAGATGGACCGAATTCTAAGGCCTGA
EST: ACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAG GTGTGACATAACGTACATCCTACTGGAGATGGACCGAATTCTAAGGCCTGAEST: gi|87156846|gb|DY401635.1|DY401635
genomic: ACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAGgtaaagaatg ... gtggtcgcagGTGTGACATAACGTACATCCTACTGGAGATGGACCGAATTCTAAGGCCTGA
EST: ACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAG GTGTGACATAACGTACATCCTACTGGAGATGGACCGAATTCTAAGGCCTGAEST: gi|26558531|gb|CA830766.1|CA830766
genomic: ACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAGgtaaagaatg ... gtggtcgcagGTGTGACATAACGTACATCCTACTGGAGATGGACCGAATTCTAAGGCCTGA
EST: ACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAG GTGTGACATAACGTACATCCTACTGGAGATGGACCGAATTCTAAGGCCTGAEST: gi|83278806|gb|DV942814.1|DV942814
genomic: ACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAGgtaaagaatg ... gtggtcgcagGTGTGACATAACGTACATCCTACTGGAGATGGACCGAATTCTAAGGCCTGA
EST: ACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAG GTGTGACATAACGTACATCCTACTGGAGATGGACCGAATTCTAAGGCCTGAEST: gi|71775256|gb|DR973134.1|DR973134
genomic: ACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAGgtaaagaatg ... gtggtcgcagGTGTGACATAACGTACATCCTACTGGAGATGGACCGAATTCTAAGGCCTGA
EST: ACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAG GTGTGACATAACGTACATCCTACTGGAGATGGACCGAATTTTAAGGCCTGA
genomic: ACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAGgtaaagaatg ... gtggtcgcagGTGTGACATAACGTACATCCTACTGGAGATGGACCGAATTCTAAGGCCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATTGGCACGTACCATGATTGGTGTGAGGCTTTCTCAACGTACCCGAGGACCTACGACCTCATCCATGCTGATAAAGTTTTCAGCAGTTACCAGGACAGgtaaagaatgcctttgctgtttaattctgctctagaaattttctttaccgttcactaagtcgtatggttttttgtatgatgtcttccttttgtgggcggccttatttggtaacaaggttttaaaatgcccacagcttaagcaagtagatactaactatggagtggtcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT