1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GACATTTTCTGGGATGAACCAGCTAGTCTATCCACAAACATGGGTGTTCTCATCCGTTGTAACCTTATGCATTGTAACACAGATGAACTATCTGAACAAGgtatgatcagtgctatgctcatgtacaataacctgtagtcgtgtcaagagaaaaggtttttcttaatggtcgaatcttgtaaaaaatattcgctatttcaatgtcttatgcacgtctgttctgtcctaccatttttgaacatatcaaaattaaattttgcag
species | Zea mays |
transcript | GRMZM2G164797_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TATCTGAACAAG GCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATGEST: gi|67026855|gb|CO455604.1|CO455604
genomic: TATCTGAACAAGgtatgatcag ... aattttgcagGCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATG
EST: CATCCGTTGTAACCTTATGCATTGTAACACAGATGAACTATCTGAACAAG GCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATGEST: gi|71301106|gb|DR786585.1|DR786585
genomic: CATCCGTTGTAACCTTATGCATTGTAACACAGATGAACTATCTGAACAAGgtatgatcag ... aattttgcagGCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATG
EST: CATCCGTTGTAACCTTATGCATTGTAACACAGATGAACTATCTGAACAAG GCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATGEST: gi|89760200|gb|DY688717.1|DY688717
genomic: CATCCGTTGTAACCTTATGCATTGTAACACAGATGAACTATCTGAACAAGgtatgatcag ... aattttgcagGCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATG
EST: CACAGATGAAATATTTGAACAAG GCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATG
genomic: CACAGATGAACTATCTGAACAAGgtatgatcag ... aattttgcagGCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACATTTTCTGGGATGAACCAGCTAGTCTATCCACAAACATGGGTGTTCTCATCCGTTGTAACCTTATGCATTGTAACACAGATGAACTATCTGAACAAGgtatgatcagtgctatgctcatgtacaataacctgtagtcgtgtcaagagaaaaggtttttcttaatggtcgaatcttgtaaaaaatattcgctatttcaatgtcttatgcacgtctgttctgtcctaccatttttgaacatatcaaaattaaattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG