1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGAGGCTGAAGTGCGGATAGCAGCTGCTGGAAAAGTAACTAAGTTTTGCCGCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaaagcaattattgaacaccatttcgttgctatttttcttctgagtgaattaactcatgccaagtgcatctacag
species | Zea mays |
transcript | GRMZM2G164352_T04 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAG GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTGEST: gi|33091965|gb|CF051959.1|CF051959
genomic: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaa ... gcatctacagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTG
EST: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAG GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTGEST: gi|87157118|gb|DY401907.1|DY401907
genomic: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaa ... gcatctacagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTG
EST: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAG GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTGEST: gi|26558526|gb|CA830761.1|CA830761
genomic: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaa ... gcatctacagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTG
EST: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAG GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTGEST: gi|32940030|gb|CF044849.1|CF044849
genomic: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaa ... gcatctacagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTG
EST: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAG GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTGEST: gi|211403483|gb|FL417168.1|FL417168
genomic: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaa ... gcatctacagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTG
EST: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAG GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTGEST: gi|32938569|gb|CF043388.1|CF043388
genomic: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaa ... gcatctacagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTG
EST: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAG GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTGEST: gi|22546073|gb|BU098394.1|BU098394
genomic: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaa ... gcatctacagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTG
EST: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAG GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTGEST: gi|31349427|gb|CD433784.1|CD433784
genomic: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaa ... gcatctacagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTG
EST: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAG GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTGEST: gi|32847343|gb|CD987024.1|CD987024
genomic: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaa ... gcatctacagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTG
EST: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAG GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTGEST: gi|31356642|gb|CD440999.1|CD440999
genomic: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaa ... gcatctacagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTG
EST: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAG GGATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTGEST: gi|42491785|gb|CK700831.1|CK700831
genomic: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaa ... gcatctacagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTG
EST: TTCCATGCGTTAAG GAATTGTCATCAGATNCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTGEST: gi|23357737|gb|BU645386.1|BU645386
genomic: TTCCATGCGTTAAGgtgggggcaa ... gcatctacagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTG
EST: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAG GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTGEST: gi|32829962|gb|CD969640.1|CD969640
genomic: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaa ... gcatctacagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTG
EST: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAG GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTGEST: gi|211315613|gb|FL415838.1|FL415838
genomic: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaa ... gcatctacagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTG
EST: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAG GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTGEST: gi|26560084|gb|CA832319.1|CA832319
genomic: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaa ... gcatctacagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTG
EST: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAG GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTGEST: gi|67039515|gb|CO465770.1|CO465770
genomic: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaa ... gcatctacagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTG
EST: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAG GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTGEST: gi|31355734|gb|CD440091.1|CD440091
genomic: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaa ... gcatctacagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTG
EST: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAG GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTG
genomic: GCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaa ... gcatctacagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGGCTGAAGTGCGGATAGCAGCTGCTGGAAAAGTAACTAAGTTTTGCCGCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtgggggcaaagcaattattgaacaccatttcgttgctatttttcttctgagtgaattaactcatgccaagtgcatctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC